Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03543 ATGAAGGAGCGGAAGTTATTATACCTTTCACGCTTTAACGTTAGAGGATCCGTTTTCCACTTATTCACATTAAAATGTATCTGCGGCGCTGCGCGCACACACATTCATTCAGGAATTGAGAGAAGAAAAGTTCGACTGATTCTCTTCTCAACTCAACTCTTGTTCCTTCATTCCGTTACTGTAACTATCTCGAAAACCATGGCTCTGATCCTTCACGCTACCAAGGAAAACAAAAATGCTTTCAAGACTTTGATTGCTGCTCAATATGTCGGTGTCCAAGTTCCTGTCTTGGAAACCCCTGATGGTGCGGTCTTTGAGAGCAATGCCATTGCTCGCTATGTTGCCCGATTGGGTGAAAACAATTTGTTTGGATCATCTCCAATTGAGCAGGCCCACGTTGAGCAGTGGATTGATTTTTCTTCTTTGGAGATTGATGCCAATATTACAAAGGTGTACTATCCAAGACTTGGATATGGCCCTTACCTTCCTCCAGTAAAGGAGGCTGCACTTTCAGCGTTGAAGAGATCATTTGAGGCTTTGAACACTCACCTTGCCCACAATACTTACCTGGTCGGGGAATCTGTTACCCTTGCTGACATCATTACAATAGCCAACTTGTATTTGGGTTTCGCTAAAATCTTGGTCAAGAGCTTCACCTCAGAGTTTCCTCATGTTGAGAGATACTTCTGGACCTTGATCAACCAGCCAAATTTCCGAAAGATATTTGGCCAGGTTAAGCAGACTGAGGCTATTCCACCTATTCAATCTGCAAAGAAGCCTGCCCAGCCTAAGGAATCAAAGCCCAAAACTAAAGAAGAACCAAAGAAAGCGGCTAAAGCAGAGCCCGAAAAGCCCAAAGAAGAAGCTGAGGAGGAGGCACCCAAGCCCAAACCCAAGAATCCTCTTGATCTTCTTCCTCCAAGCAAGATGGTATTGGATGACTGGAAAAGACTCTACTCTAACACTAAGACTAACTTCCGTGAGGTTGCAGTCAAAGGATTCTGGGACATGTATGATCCAGAGGGATACTCTCTCTGGTTCTGTGACTACAAATACAATGATGAGAACACTGTTTCTTTCGTGACACTGAACAAGGTTGGAGGATTTCTTCAGAGGATGGATCTTGCTCGCAAGTATGCTTTTGGAAAGATGCTTGTGATTGGATCAGAGCCTCCATTTAAGGTGAAGGGATTGTGGCTTTTCCGTGGACAAGAGATTCCAAAGTTTGTCATGGATGAATGCTATGATATGGAGCTGTATGAGTGGACCAAGGTTGACATCTCTGACGAAGCTCAAAAAGAGCGTGCCAGTCAGATGATTGAAGACGCTGAACCATTTGAGGGTGAGGCTCTTTTGGATGCCAAGTGCTTTAAGTGA 1377 0.4423 MKERKLLYLSRFNVRGSVFHLFTLKCICGAARTHIHSGIERRKVRLILFSTQLLFLHSVTVTISKTMALILHATKENKNAFKTLIAAQYVGVQVPVLETPDGAVFESNAIARYVARLGENNLFGSSPIEQAHVEQWIDFSSLEIDANITKVYYPRLGYGPYLPPVKEAALSALKRSFEALNTHLAHNTYLVGESVTLADIITIANLYLGFAKILVKSFTSEFPHVERYFWTLINQPNFRKIFGQVKQTEAIPPIQSAKKPAQPKESKPKTKEEPKKAAKAEPEKPKEEAEEEAPKPKPKNPLDLLPPSKMVLDDWKRLYSNTKTNFREVAVKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQEIPKFVMDECYDMELYEWTKVDISDEAQKERASQMIEDAEPFEGEALLDAKCFK 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03543 458 FunFam Elongation factor 1 gamma 119 255 - -
Trre5g03543 458 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 298 458 IPR036433 GO:0003746|GO:0006414
Trre5g03543 458 MobiDBLite consensus disorder prediction 262 298 - -
Trre5g03543 458 Pfam Glutathione S-transferase, C-terminal domain 165 236 IPR004046 -
Trre5g03543 458 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 93 458 IPR044628 GO:0004364
Trre5g03543 458 CDD GST_C_EF1Bgamma_like 129 249 - -
Trre5g03543 458 Pfam Elongation factor 1 gamma, conserved domain 297 405 IPR001662 GO:0003746|GO:0006414
Trre5g03543 458 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 298 458 IPR001662 GO:0003746|GO:0006414
Trre5g03543 458 FunFam Elongation factor 1-gamma 1 298 458 - -
Trre5g03543 458 SFLD Glutathione Transferase (cytosolic) 91 229 IPR040079 -
Trre5g03543 458 SMART EF1G_2 297 405 IPR001662 GO:0003746|GO:0006414
Trre5g03543 458 SUPERFAMILY GST C-terminal domain-like 113 252 IPR036282 -
Trre5g03543 458 Gene3D - 119 253 - -
Trre5g03543 458 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 126 254 IPR010987 -
Trre5g03543 458 SUPERFAMILY eEF1-gamma domain 298 458 IPR036433 GO:0003746|GO:0006414
Trre5g03543 458 Pfam Glutathione S-transferase, N-terminal domain 92 116 IPR004045 -
Trre5g03543 458 MobiDBLite consensus disorder prediction 252 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03543 Trre-Chr5 33064278 33067219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03543 67 458 Eukaryotic Initiation Factors Gene Family AT1G57720 69.928 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03543 K03233 - gmx:547637 609.757