Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03530 ATGCAGCAACATCAAGTTATGGAAACATCATCAAATCATGAGACACAGAAATCAGTATGGAGAAAATTCTTACCATATGTTGGTCCTGGTTTTCTTGTTTCCTTGGCTTACCTTGATCCTGGAAACATGCAAACTGATTTGCAAGCTGGAGCTAACCATAGATATGAGCTGCTGTGGATCATACTTATTGGACTCATATTTGCCCTTATAATTCAGTCATTGGCTGCAAATCTCGGCGTAACCACCGGAAAACATCTTTCAGAAGTATGCAAAGTTGAATATCCATTATTTGTGAAATACTGCTTATGGTTATTAGCAGAGGTTGCTGTCATAGCTGCTGACATACCTGAAGTGATTGGGACAGCATTTGCACTTAACATACTCTTTCACATCCCATTATGGGCAGGAGTTCTGTTGACTGGCTGCAGCACTCTCTTGCTTTTGAGTCTGCAGAGGTTTGGGGTGAGGAAGTTGGAACTACTGATAACAATTCTAGTATTTGTAATGGCTGGATGTTTCTTTGCTGAAATGAGCTATGTAGATCCCCCAGTTTCTGATGTATTAAAGGGAATGTTTATACCCAAACTTTCCAGTGAAGGAACCGTAGGCGATGCTATTGCCCTATTGGGCGCCCTTATCATGCCGCACAATCTTTTCCTCCATTCTGCTCTGGTGCTATCTCGAAAAGTACCTAGTTCTGTGCGAGGCATCAATGATGCATGTAGATACTTTCTCTATGAGAGTGGATTCGCTTTGTTTGTGGCATTTTTAATCAATGTCGCAATGATTTCTGTGTCTGGAACTGTTTGTTCTGCTAGTGATCTTTCTGGAGACGATGCTCAACGCTGCAACGATCTTACCCTTAATTCCGCTTCTTTCCTTCTCAAGAATGTGTTGGGAAAATCGAGCTCAACCATTTATGCCATAGCACTGCTTGCCTCAGGACAAAGTTCTACTATCACCGGAACCTATGCAGGGCAGTACATCATGCAGGGTTTCTTGGACATAAGGATGAAAAGATGGAAAAGAAACTTGATGACTAGGTGCATTGCAATAGCACCTAGTCTTGTTGTTGCCATAGTTGGCGGTTCTTCTGGTTCTAGTCGGCTTATCATCATCGCATCGATGATACTTTCTTTTGAGCTTCCATTCGCTTTAATTCCACTTCTTAAGTTTAGCAGCAGTAGTACAAAGATGGGACCTCACAAGAATTCAATGATTATCATTACAATCTCATGGATACTAGGCTCTGGGATCATTGGTATCAATGTGTACTATCTGAGTACTGCTTTTGTGAAGTGGATAATTCATAGTAGTCTACCAAAGGTTGCAAATGTGTTCATTGGGATTATAGTGTTTCCTCTAATGGCAATTTATATTCTCTCAATTATCTACCTGACCTTTAGAAAAGACACGGTTGAGACATTTATCGAGACAAAGAATGACACGGTAACAGAAAACCAAGTGGAAAAAGGAATGGATCATGGTCAATTAGAGTTGAGCGATGTTCCTTATAGACAAGACTTAGCTGATATCCCATTACCAGAATAA 1551 0.4075 MQQHQVMETSSNHETQKSVWRKFLPYVGPGFLVSLAYLDPGNMQTDLQAGANHRYELLWIILIGLIFALIIQSLAANLGVTTGKHLSEVCKVEYPLFVKYCLWLLAEVAVIAADIPEVIGTAFALNILFHIPLWAGVLLTGCSTLLLLSLQRFGVRKLELLITILVFVMAGCFFAEMSYVDPPVSDVLKGMFIPKLSSEGTVGDAIALLGALIMPHNLFLHSALVLSRKVPSSVRGINDACRYFLYESGFALFVAFLINVAMISVSGTVCSASDLSGDDAQRCNDLTLNSASFLLKNVLGKSSSTIYAIALLASGQSSTITGTYAGQYIMQGFLDIRMKRWKRNLMTRCIAIAPSLVVAIVGGSSGSSRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSMIIITISWILGSGIIGINVYYLSTAFVKWIIHSSLPKVANVFIGIIVFPLMAIYILSIIYLTFRKDTVETFIETKNDTVTENQVEKGMDHGQLELSDVPYRQDLADIPLPE 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03530 516 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 21 397 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03530 516 NCBIfam Nramp family divalent metal transporter 28 394 - -
Trre5g03530 516 PRINTS Natural resistance-associated macrophage protein signature 155 176 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03530 516 PRINTS Natural resistance-associated macrophage protein signature 130 149 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03530 516 PRINTS Natural resistance-associated macrophage protein signature 375 394 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03530 516 PRINTS Natural resistance-associated macrophage protein signature 205 228 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03530 516 PRINTS Natural resistance-associated macrophage protein signature 343 360 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03530 516 PRINTS Natural resistance-associated macrophage protein signature 315 334 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03530 516 PRINTS Natural resistance-associated macrophage protein signature 102 128 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03530 516 Pfam Natural resistance-associated macrophage protein 44 405 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03530 516 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 8 477 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03530 516 Hamap Divalent metal cation transporter MntH [mntH]. 10 431 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03530 Trre-Chr5 32853972 32860782 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03530 6 516 Inorganic Solute Cotransporters AT1G15960 58.560 0.0 623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03530 K21398 - gmx:100787785 825.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03530 5 32853972 32860782 Trre5g03530 5 32853972 32860782 ECH