Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03529 ATGGCAAACTTGATGCAGCAACAGCAACATCAAGTTAGTGAATCATTCTCAAATCATGAGACACCAAAATCTGGATGGAGAAAATTCTTACCATATGTTGTTGGTCCTGGTTTTCTTGTTTCCTTGGCTTACCTTGATCCTGGAAACATGGAAACTGATTTGCAAGCTGGAGCTAACCACAGATATGAGCTGCTGTGGATAATACTTATTGGACTCATATTTGCCCTTATAATTCAATCATTGGCTGCAAATCTCGGCGTAACCACCGGGAAACATCTTTCAGAAGTATGTAAAGTTGAATATCCATTATTTGTGAAGTATTGTTTATGGTTATTAGCAGAGGTTGCTGTCATAGCTGCTGACATACCTGAAGTGATTGGGACAGCATTTGCACTTAACATACTCTTTCACATCCCATTATGGGCAGGAGTTCTGTTGACCGGCTGCAGCACTCTCTTGCTTTTGAGTCTGCAGAGGTTCGGGGTGAGGAAGTTGGAACTACTGATAGCAATCCTAATATTTGTAATGGCTGGATGTTTCTTTGCTGAAATGAGCTATGTAAATCCCCCAGCTACTGATGTACTAAAGGGAATGTTTGTACCCAAACTTGCCGGTGAAGGAACCGTAGGCGATGCTATTGCCCTTTTGGGAGCCCTTATCATGCCGCACAATCTTTTCCTCCATTCTGCTCTGGTGCTATCTAGAAAAGCACCTAGTTCTGTGCGAGGCATCAATGATGCTTGTAGATACTTTCTCTATGAGAGTGGATTTGCTTTGTTTGTGGCATTTTTAATCAATGTCGCGATGATTTCTGTGTCTGGAACTGTTTGTTCTGCTAGTGATCTTTCTGGAGACAATGCTGAACGCTGCAACGATCTTACCCTTAACTCTGCTTCTTTCATTCTCAAGAATGTGTTGGGAAAATCGAGCTCAACCATTTATGCCATAGCACTGCTTGCCTCAGGACAAAGTTCTACCATCACAGGAACCTATGCAGGGCAGTACATCATGCAGGGTTTCTTGGACATAAAGATGAAAAGATGGAAAAGAAACTTGATGACTAGGTGCATTGCCATAGCACCTAGTCTTGTTGTTGCCATCGTTGGAGGTTCTTCTGGCTCTAGTCGGCTTATCATCATCGCATCAATGATACTCTCTTTTGAGCTTCCATTTGCTTTAATTCCACTTCTTAAGTTTAGCAGCAGTAGTACAAAGATGGGACCTCACAAGAATTCAATGATTATTATTACAATCTCATGGATACTAGGCTCTGGGATCATTGGTATCAATGTGTACTATCTCAGTACTGCTTTTGTGAAGTGGATAATTCATAGTAGTCTACCAAAGGTGGCAAATGTGTTCATTGGAATTATAGTGTTTCCTCTAATGGCAATTTATATTCTCTCAATTATCTACCTGACCTTTAGAAAAGACACAGTTGAGACATTTATCGAGACAAAGAATGAAACGGTAACACAAAACCAAGTGGAAAAAGGAATGGATCATGGTCAGTTAGAGTTGAGCGATGTTCCTTATAGACAAGACTTAGCTGATATCCCATTACCAGAATAA 1572 0.4084 MANLMQQQQHQVSESFSNHETPKSGWRKFLPYVVGPGFLVSLAYLDPGNMETDLQAGANHRYELLWIILIGLIFALIIQSLAANLGVTTGKHLSEVCKVEYPLFVKYCLWLLAEVAVIAADIPEVIGTAFALNILFHIPLWAGVLLTGCSTLLLLSLQRFGVRKLELLIAILIFVMAGCFFAEMSYVNPPATDVLKGMFVPKLAGEGTVGDAIALLGALIMPHNLFLHSALVLSRKAPSSVRGINDACRYFLYESGFALFVAFLINVAMISVSGTVCSASDLSGDNAERCNDLTLNSASFILKNVLGKSSSTIYAIALLASGQSSTITGTYAGQYIMQGFLDIKMKRWKRNLMTRCIAIAPSLVVAIVGGSSGSSRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSMIIITISWILGSGIIGINVYYLSTAFVKWIIHSSLPKVANVFIGIIVFPLMAIYILSIIYLTFRKDTVETFIETKNETVTQNQVEKGMDHGQLELSDVPYRQDLADIPLPE 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03529 523 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 7 484 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03529 523 PRINTS Natural resistance-associated macrophage protein signature 109 135 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03529 523 PRINTS Natural resistance-associated macrophage protein signature 382 401 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03529 523 PRINTS Natural resistance-associated macrophage protein signature 137 156 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03529 523 PRINTS Natural resistance-associated macrophage protein signature 162 183 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03529 523 PRINTS Natural resistance-associated macrophage protein signature 212 235 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03529 523 PRINTS Natural resistance-associated macrophage protein signature 350 367 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03529 523 PRINTS Natural resistance-associated macrophage protein signature 322 341 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03529 523 NCBIfam Nramp family divalent metal transporter 35 401 - -
Trre5g03529 523 Pfam Natural resistance-associated macrophage protein 51 412 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03529 523 Hamap Divalent metal cation transporter MntH [mntH]. 17 438 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03529 523 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 28 404 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03529 Trre-Chr5 32846517 32850775 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03529 23 523 Inorganic Solute Cotransporters AT1G15960 59.880 0.0 616
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03529 K21398 - gmx:100787785 828.55