Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03528 ATGGCAAACTTGATGCAGCAACAGCAACATCAAACACCAAAATCTGGATGGAGAAAATTCTTACCATATGTTGTTGGTCCTGGTTTTCTTGTTTCCTTGGCTTACCTTGATCCTGGAAACATGGAAACTGATTTGCAAGCTGGAGCTAACCACAGATATGAGCTGCTGTGGATAATACTTATTGGACTCATATTTGCCCTTATAATTCAATCATTGGCTGCAAATCTCGGCGTAACCACCGGGAAACATCTTTCAGAAGTATGTAAAGTTGAATATCCATTATTTGTGAAGTATTGTTTATGGTTATTAGCAGAGGTTGCTGTCATAGCTGCTGACATACCTGAAGTGATTGGGACAGCATTTGCACTTAACATACTCTTTCACATCCCATTATGGGCAGGAGTTCTGTTGACCGGCTGCAGCACTCTCTTGCTTTTGAGTCTGCAGAGGTTCGGGGTGAGGAAGTTGGAACTACTGATAGCAATCCTAATATTTGTAATGGCTGGATGTTTCTTTGCTGAAATGAGCTATGTAAATCCCCCAGCTACTGATGTACTAAAGGGAATGTTTGTACCCAAACTTGCCGGTGAAGGAACCGTAGGCGATGCTATTGCCCTTTTGGGAGCCCTTATCATGCCGCACAATCTTTTCCTCCATTCTGCTCTGGTGCTATCTAGAAAAGCACCTAGTTCTGTGCGAGGCATCAATGATGCTTGTAGATACTTTCTCTATGAGAGTGGATTTGCTTTGTTTGTGGCATTTTTAATCAATGTCGCGATGATTTCTGTGTCTGGAACTGTTTGTTCTGCTAGTGATCTTTCTGGAGACAATGCTGAACGCTGCAACGATCTTACCCTTAACTCTGCTTCTTTCATTCTCAAGAATGTGTTGGGAAAATCGAGCTCAACCATTTATGCCATAGCACTGCTTGCCTCAGGACAAAGTTCTACCATCACAGGAACCTATGCAGGGCAGTACATCATGCAGGGTTTCTTGGACATAAAGATGAAAAGATGGAAAAGAAACTTGATGACTAGGTGCATTGCCATAGCACCTAGTCTTGTTGTTGCCATCGTTGGAGGTTCTTCTGGCTCTAGTCGGCTTATCATCATCGCATCAATGATACTCTCTTTTGAGCTTCCATTTGCTTTAATTCCACTTCTTAAGTTTAGCAGCAGTAGTACAAAGATGGGACCTCACAAGAATTCAATGATTATTATTACAATCTCATGGATACTAGGCTCTGGGATCATTGGTATCAATGTGTACTATCTCAGTACTGCTTTTGTGAAGTGGATAATTCATAGTAGTCTACCAAAGGTGGCAAATGTGTTCATTGGAATTATAGTGTTTCCTCTAATGGCAATTTATATTCTCTCAATTATCTACCTGACCTTTAGAAAAGACACAGTTGAGACATTTATCGAGACAAAGAATGAAACGGTAACACAAAACCAAGTGGAAAAAGGAATGGATCATGGTCAGTTAGAGTTGAGCGATGTTCCTTATAGACAAGACTTAGCTGATATCCCATTACCAGAATAA 1545 0.4097 MANLMQQQQHQTPKSGWRKFLPYVVGPGFLVSLAYLDPGNMETDLQAGANHRYELLWIILIGLIFALIIQSLAANLGVTTGKHLSEVCKVEYPLFVKYCLWLLAEVAVIAADIPEVIGTAFALNILFHIPLWAGVLLTGCSTLLLLSLQRFGVRKLELLIAILIFVMAGCFFAEMSYVNPPATDVLKGMFVPKLAGEGTVGDAIALLGALIMPHNLFLHSALVLSRKAPSSVRGINDACRYFLYESGFALFVAFLINVAMISVSGTVCSASDLSGDNAERCNDLTLNSASFILKNVLGKSSSTIYAIALLASGQSSTITGTYAGQYIMQGFLDIKMKRWKRNLMTRCIAIAPSLVVAIVGGSSGSSRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSMIIITISWILGSGIIGINVYYLSTAFVKWIIHSSLPKVANVFIGIIVFPLMAIYILSIIYLTFRKDTVETFIETKNETVTQNQVEKGMDHGQLELSDVPYRQDLADIPLPE 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03528 514 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 19 395 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03528 514 PRINTS Natural resistance-associated macrophage protein signature 153 174 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03528 514 PRINTS Natural resistance-associated macrophage protein signature 341 358 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03528 514 PRINTS Natural resistance-associated macrophage protein signature 128 147 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03528 514 PRINTS Natural resistance-associated macrophage protein signature 373 392 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03528 514 PRINTS Natural resistance-associated macrophage protein signature 100 126 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03528 514 PRINTS Natural resistance-associated macrophage protein signature 203 226 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03528 514 PRINTS Natural resistance-associated macrophage protein signature 313 332 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03528 514 Hamap Divalent metal cation transporter MntH [mntH]. 8 429 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03528 514 Pfam Natural resistance-associated macrophage protein 42 403 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03528 514 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 8 475 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03528 514 NCBIfam Nramp family divalent metal transporter 26 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03528 Trre-Chr5 32846517 32850775 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03528 14 514 Inorganic Solute Cotransporters AT1G15960 59.880 0.0 616
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03528 K21398 - gmx:100787785 823.928