Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03527 ATGGCAAGCTCAATGCAACAACAAGAAGTGAGTAATGGTAACAACAATCGCATTGTAGCTGTCAATGTGACCCCTTCGGGCACACCATCTCATGAACATGACTTCTCAAAACCCGATCAGACACCAGGATGGAAAAAGTTCTTGTCATATGTAGGACCTGGCTTTCTTGTCTCCTTGGCTTATCTTGATCCTGGAAATATGGAAACTGATTTACAAGCAGGAGCAAACCATGGATATGAGCTGCTGTGGATCATACTTATTGGACTCATATTTGCCCTTATAATTCAGTCATTGGCTGCAAATCTTGGAGTATGCACTGGAAAACATCTTTCAGAAATTTGTAAAGCCGAGTACCCATTATTTGTAAAGTATTGTTTATGGATATTAGCTGAGCTTGCTGTCATAGCTGCAGACATACCTGAAGTGATTGGAACAGCTTTTGCACTTAACATACTCTTTCACATCCCAGTATGGGGAGGAGTTTTGTTGACTGGATGCAGCACTCTCTTGTTTTTGGGTCTGCAAAGATTTGGGGTAAGGAAGTTGGAATTGCTGATATCAATCTTAGTATTTGTAATGGCTGCATGTTTCTTCGGAGAAATGAGCTACGTAAAACCCCCTGCTTCTGGTGTTATTGAGGGAATGTTTGTCCCCAAACTCAAAGGAAACGGTGCCGTAGCCGATGCTATTGCTCTTTTGGGTGCCCTTATCATGCCGCACAATCTTTTCCTCCATTCTGCTTTGGTTCTGTCTAGAAAAATACCTGGTTCTAAGCGCGGCATCAATGATGCATGTAGATACTTTCTCATTGAGAGTGGTTTCGCATTGTTTGTGGCATTTCTAATCAATATAGCAATGATTTCTGTCACTGGCACTGTTTGCAAAGCCGATGACCTTTCTGGAGAGAATGTTGATCGCTGCAATGATCTTACACTCAACTCCGCTTCTTTCCTTCTCAAGAATGTGTTGGGACGTTCAAGCTCAATCATCTATGCCATAGCATTGCTAGCTTCAGGACAGAGTTCTGCCATCACTGGAACCTATGCAGGACAATTTATCATGCAGGGTTTCTTGGACTTAAAAATGAAAAAATGGATTAGGAACTTGGTGACTAGAATTGTTGCCATAGCACCTAGTCTTGTTGTCTCTATCATTGGCGGTTCTTCTGGAGCTGGAAGACTTATCATCATTGCATCGATGATACTTTCTTTTGAGCTTCCATTCGCTTTAATTCCACTCCTTAAGTTTAGCAGCAGCAGTACCAAGATGGGACCTCACAAGAATTCTATGATTATCATTGTCATCTCATGGATACTGGGTTTGGGAATCATCGGTATCAATGTGTATTACCTCATTACTGCTTTTGTGGGTTGGTTAATTCATAGCACTCTACCAAAGGTTGCAAATGTCTTCATTGGGATCATAGTGTTTCCTCTAATGGCACTCTATGTTGTATCAGTTATCTATCTAACATTCAGAAAAGATACTGTTAAAACATTTGTGGAGGTTAAGGATGACCCAGCAATGCAAACCCACGTGGAAAAGGGGTTTGTAAACGATGGTCAGGTAGAGTTGAGTTATGCTCCTTACAGAGAAGATTTAGCTGATATTGCGCTGCCAGAGGGACCTAGGTTGTGA 1638 0.4164 MASSMQQQEVSNGNNNRIVAVNVTPSGTPSHEHDFSKPDQTPGWKKFLSYVGPGFLVSLAYLDPGNMETDLQAGANHGYELLWIILIGLIFALIIQSLAANLGVCTGKHLSEICKAEYPLFVKYCLWILAELAVIAADIPEVIGTAFALNILFHIPVWGGVLLTGCSTLLFLGLQRFGVRKLELLISILVFVMAACFFGEMSYVKPPASGVIEGMFVPKLKGNGAVADAIALLGALIMPHNLFLHSALVLSRKIPGSKRGINDACRYFLIESGFALFVAFLINIAMISVTGTVCKADDLSGENVDRCNDLTLNSASFLLKNVLGRSSSIIYAIALLASGQSSAITGTYAGQFIMQGFLDLKMKKWIRNLVTRIVAIAPSLVVSIIGGSSGAGRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSMIIIVISWILGLGIIGINVYYLITAFVGWLIHSTLPKVANVFIGIIVFPLMALYVVSVIYLTFRKDTVKTFVEVKDDPAMQTHVEKGFVNDGQVELSYAPYREDLADIALPEGPRL 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03527 545 PRINTS Natural resistance-associated macrophage protein signature 339 358 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03527 545 PRINTS Natural resistance-associated macrophage protein signature 399 418 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03527 545 PRINTS Natural resistance-associated macrophage protein signature 179 200 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03527 545 PRINTS Natural resistance-associated macrophage protein signature 229 252 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03527 545 PRINTS Natural resistance-associated macrophage protein signature 367 384 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03527 545 PRINTS Natural resistance-associated macrophage protein signature 126 152 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03527 545 PRINTS Natural resistance-associated macrophage protein signature 154 173 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03527 545 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 45 421 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03527 545 Pfam Natural resistance-associated macrophage protein 68 429 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03527 545 Hamap Divalent metal cation transporter MntH [mntH]. 29 455 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03527 545 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 25 498 IPR001046 GO:0016020|GO:0030001|GO:0046873
Trre5g03527 545 NCBIfam Nramp family divalent metal transporter 52 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03527 Trre-Chr5 32833109 32837885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03527 9 541 Inorganic Solute Cotransporters AT1G15960 58.209 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03527 K21398 - gmx:100787785 870.922