Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03518 ATGGCGGATAGGGTCGAAACTGTTTCAAGATTAGCACAGTGGAAAATAGATAACTTCGGACCTTGTTCCTACAAAAAATCTGATCCTTTTAAGCTCGGAATCTGGAACTGGTACTTTTCAATCGTAAGGAATAGGTTCTTCTCCATACACCTTTTTCCAGAACCTTCTCGTATTTCTAAAGAACATCCACCTCTTGCTCGATTCATTCTTCGTGTTTCCGTTGCTGGTTCATCCCGCAAATTTATTATTTCTCCTGTTTATGAAAGGCTGCTTAGGACACAAGATGACTTTGTCTGGCCTGTTGACACTACTTATGTGGGCCGCTTCATCATAGATGTTGAGTTTCTTGACTTGAAGATATGCCATATGAATGGTGGAGAACCTAGTTCTGTATGGTCATCTGATGGAAATTCACAATGTGTTGAAGCTCAAAGAAGTACTCTTTGTTGCCTCTCTCGCATGCTCGATGAGGCTATACATGCTGACCTAACCATTATCACTGCAGATGGTACGTTGAGAGCTCACAAGGCAATTTTGTCAGCGAGTTCCCCCGTGTTTCAAAGCATGTTTCATCACAACCTGAAGGAAAAAGAGTCGTCAACAATCCATATCGAAGACATGTCACTTGAATCATGCAGTGCTCTTCTAAGTTACTTGTATGGAGCAATTAAACAAGAAGATTTCCGGAAACACTGTCTTGCATTGCTCGGAGCAGCCAATAAGTATGATATTGGTAGCCTGAAAGATTTATGTGAGGAAAACCTTCTTGAAGATATTAACTCAGACAATGTTCTTGAGATGCTAAATGAGGCTTGGCTTTATCAATTACACAAGTTAAAGAAAGGATGCTTAACATTCTTATTTGAATTTGGTAAAATATATGATGTTAAAGATGATGAAATAAATAACCTTTTCCAGCATGCAGATAGGGAGCTAGTGATGGAGATGTTTCAGGTGATGCTTACAATTTCCAACCCAGAATAG 984 0.3953 MADRVETVSRLAQWKIDNFGPCSYKKSDPFKLGIWNWYFSIVRNRFFSIHLFPEPSRISKEHPPLARFILRVSVAGSSRKFIISPVYERLLRTQDDFVWPVDTTYVGRFIIDVEFLDLKICHMNGGEPSSVWSSDGNSQCVEAQRSTLCCLSRMLDEAIHADLTIITADGTLRAHKAILSASSPVFQSMFHHNLKEKESSTIHIEDMSLESCSALLSYLYGAIKQEDFRKHCLALLGAANKYDIGSLKDLCEENLLEDINSDNVLEMLNEAWLYQLHKLKKGCLTFLFEFGKIYDVKDDEINNLFQHADRELVMEMFQVMLTISNPE 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03518 327 SMART BTB_4 161 259 IPR000210 GO:0005515
Trre5g03518 327 CDD BTB_POZ_ZBTB_KLHL-like 160 242 - -
Trre5g03518 327 Pfam BTB/POZ domain 154 257 IPR000210 GO:0005515
Trre5g03518 327 Gene3D Potassium Channel Kv1.1; Chain A 131 288 IPR011333 -
Trre5g03518 327 PANTHER OS08G0495500 PROTEIN-RELATED 1 326 IPR044714 -
Trre5g03518 327 SUPERFAMILY POZ domain 146 257 IPR011333 -
Trre5g03518 327 ProSiteProfiles BTB domain profile. 161 220 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03518 Trre-Chr5 32754270 32756674 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trre5g03518 BTB 8.5e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03518 K10523 - gmx:100787262 549.28