Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre5g03511 | ATGGGGACAACGAAGAACACCAAAACCAAAATAGTCAAAAACAAACAAAACGATAAGAAAACCATCGCCGATGAAACCAACAAGGAAACCAAATCAGACAACAATGGTGTTTTTGCTTCTTGTTCCTTTTCTAGTCTTGGTCTTCACCAAACCTTATGTGACCAACTTCATGAAAGAATGGGTTTTGAAGGTCCAACATTAGTTCAAGCTCAAGCTATTCCTGTTGTTCTCTCTGGCCGTCATGCACTGGTTAATGCTGCTACGGGCACTGGGAAGACTGTTGCATATCTGGCTCCAATAATTCATCATTTGCAGAGTTATGAGAAGCGAATTCAGCGCTCTGATGGAACATTTGCGTTGGTTCTTGTACCAACGCGTGAGTTATGTTTGCAGGTTCATGAAATTCTTCAGAAATTATTGCACCGGTTTCATTGGATTGTTCCAGGGTATATTATGGGTGGTGAAAGTAGATCAAAGGAGAAAGCCAGGCTGCGCAAAGGCATATCAATTCTTATTGCAACCCCTGGGCGCCTTTTAGATCACTTGAAGAATACAACATCATTCTTGTACACAAATTTGCGCTGGATAATTTTTGATGAAGCTGATCGTATTTTGGAATTAGGATTTGGGAAAGAGATACAAGATATACTAAATCTTTTAGGTTCGACGAAAACAGGTCAAAATGACCAAAAGAATGAAGTTCCATGTCCCTCTAAATTTCAAAGACAGAACCTGCTTTTGTCAGCCACCTTAAACGAGAAAGTAAACCACCTTGCTAAAATTAGCTTAGAGGATCCAGTGATGATCGGTATTGATGATAAAATAATGAAACCAACGTCAAACATTAGATTTGATAATTCAGATTCTGATGAAGATAACGAAGACAGGAATTCCAGTAAAATACAAGCAGTTGGAGCTTATAAAGTGCCTGAACAGTTGATTCAGAGATACTTGAAAGCACCTTGTGGATCACGGCTTGCTATACTTCTTTCAATTCTAAAGCATCTTTTTGAAAGGGAACCTTCACAGAAGGTTGTGCTATTCTTTTCAACATGCGATGCTGTGGACTTTCACTATTCTTTATTAACCGAATTCCTTTTCTCATCATATCCACAAACCGAAGAAGGGAACAGAACGATGTTTCTTGGATGTAAAACTCTTCGGCTACATGGTAATATGGAACAGGAGGATAGGACACGCAGTTTTCAGGCTTTTAAAACTGAGAAATCCGCCCTTCTTTTGTCTACTGATGTTTCTGCCAGAGGCCTAGATTTTCCGAATGTTAGATGCATCATACAATATGATTCTCCCGGGGAAGCTACTGAATATGTTCATAGAGTTGGAAGAACTGCTCGAATGGGTGAAAGAGGAGAGTCCTTGTTATTTCTGCAACCAAGTGAAATAGACTATTTACAAGACTTGGAGAAACATGGTGTCTCGCTAGTAGAGTATCCTCTCGTCAAAGTGTTGGATAGTTTCCCACTATCTGCACACAAGAACAACATAAAGAAATCAGTTTTCATAGATTTGCATCCCTGGATCATATGTCTCCAGAAAGCACTTGAGGCCTTCATCTCATCCAAGCCCAAGATGGATGAACTTGCGAAGAGGGCATTTTGCTCTTGGGTTCGTGCATACACCGCACATCGTGGAGATCTGAAAAGAATATTTATGGTTAAGAAACTTCACTTGGGGCACGTAGCGAAAAGCTTTGCATTGAAACAACAACCCTCATTAGTTGGAAAGTCATTCCAAAACCAAACTAAGAAGAGAAAGAGATTTGAAAAGAAAAATGGGTCGTCGAAAACAAGAAAAGTTGCACGGAGTGTGAAGTAA | 1836 | 0.3981 | MGTTKNTKTKIVKNKQNDKKTIADETNKETKSDNNGVFASCSFSSLGLHQTLCDQLHERMGFEGPTLVQAQAIPVVLSGRHALVNAATGTGKTVAYLAPIIHHLQSYEKRIQRSDGTFALVLVPTRELCLQVHEILQKLLHRFHWIVPGYIMGGESRSKEKARLRKGISILIATPGRLLDHLKNTTSFLYTNLRWIIFDEADRILELGFGKEIQDILNLLGSTKTGQNDQKNEVPCPSKFQRQNLLLSATLNEKVNHLAKISLEDPVMIGIDDKIMKPTSNIRFDNSDSDEDNEDRNSSKIQAVGAYKVPEQLIQRYLKAPCGSRLAILLSILKHLFEREPSQKVVLFFSTCDAVDFHYSLLTEFLFSSYPQTEEGNRTMFLGCKTLRLHGNMEQEDRTRSFQAFKTEKSALLLSTDVSARGLDFPNVRCIIQYDSPGEATEYVHRVGRTARMGERGESLLFLQPSEIDYLQDLEKHGVSLVEYPLVKVLDSFPLSAHKNNIKKSVFIDLHPWIICLQKALEAFISSKPKMDELAKRAFCSWVRAYTAHRGDLKRIFMVKKLHLGHVAKSFALKQQPSLVGKSFQNQTKKRKRFEKKNGSSKTRKVARSVK | 611 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre5g03511 | 611 | SMART | helicmild6 | 356 | 454 | IPR001650 | - | |
Trre5g03511 | 611 | MobiDBLite | consensus disorder prediction | 11 | 31 | - | - | |
Trre5g03511 | 611 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 332 | 501 | IPR001650 | - | |
Trre5g03511 | 611 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 116 | 475 | IPR027417 | - | |
Trre5g03511 | 611 | SMART | ultradead3 | 61 | 285 | IPR014001 | - | |
Trre5g03511 | 611 | Gene3D | - | 323 | 606 | IPR027417 | - | |
Trre5g03511 | 611 | MobiDBLite | consensus disorder prediction | 586 | 611 | - | - | |
Trre5g03511 | 611 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 73 | 269 | IPR014001 | - | |
Trre5g03511 | 611 | FunFam | RNA helicase | 3 | 271 | - | - | |
Trre5g03511 | 611 | Pfam | DEAD/DEAH box helicase | 67 | 257 | IPR011545 | GO:0003676|GO:0005524 | |
Trre5g03511 | 611 | CDD | DEADc_DDX31 | 52 | 270 | - | - | |
Trre5g03511 | 611 | Gene3D | - | 3 | 272 | IPR027417 | - | |
Trre5g03511 | 611 | MobiDBLite | consensus disorder prediction | 280 | 301 | - | - | |
Trre5g03511 | 611 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Trre5g03511 | 611 | MobiDBLite | consensus disorder prediction | 284 | 298 | - | - | |
Trre5g03511 | 611 | Pfam | Helicase conserved C-terminal domain | 331 | 454 | IPR001650 | - | |
Trre5g03511 | 611 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 41 | 70 | IPR014014 | GO:0003724 | |
Trre5g03511 | 611 | Pfam | Domain of unknown function (DUF4217) | 518 | 578 | IPR025313 | - | |
Trre5g03511 | 611 | MobiDBLite | consensus disorder prediction | 582 | 611 | - | - | |
Trre5g03511 | 611 | CDD | SF2_C_DEAD | 313 | 463 | - | - | |
Trre5g03511 | 611 | SMART | DUF4217_3 | 516 | 581 | IPR025313 | - | |
Trre5g03511 | 611 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 197 | 205 | IPR000629 | - | |
Trre5g03511 | 611 | PANTHER | RNA HELICASE | 17 | 582 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre5g03511 | Trre-Chr5 | 32685670 | 32692603 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre5g03511 | 42 | 463 | Eukaryotic Initiation Factors Gene Family | AT3G13920 | 25.118 | 2.61e-30 | 122 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre5g03511 | K14806 | - | gmx:100805157 | 948.732 |