Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03507 ATGGGGACAACGAAGAACACTAAAACCAAAATAGTCAAAAACAAGCAAAACGATAAGAAAATCATCGCTGATGGAACCAACAAGGAAACCAAATCAAACAACAATAGTGTTTTTGCTTCTTGTTCCTTTTCTAGTCTTGGTCTTCACCAAACCTTATGTGACCAACTTCATGAAAGAATGGGTTTTGAAGGTCCAACATTAGTTCAAGCTCAAGCTATTCATGTTGTTCTCTCTGGCCGTCATGCACTGGTTAATGCTGCTACGGGCACTGGGAAGACTGTTGCATATCTGGCTCCAATAATTCATCATTTGCAGAGTTATGAGAAGCGAATTCAGCGCTCTGATGGAACATTTGGTTACTCAGTATCGATTTTATGTCACTTTGGATATAGTGGCAACTGA 402 0.398 MGTTKNTKTKIVKNKQNDKKIIADGTNKETKSNNNSVFASCSFSSLGLHQTLCDQLHERMGFEGPTLVQAQAIHVVLSGRHALVNAATGTGKTVAYLAPIIHHLQSYEKRIQRSDGTFGYSVSILCHFGYSGN 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03507 133 Pfam DEAD/DEAH box helicase 67 107 IPR011545 GO:0003676|GO:0005524
Trre5g03507 133 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 15 109 - -
Trre5g03507 133 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 111 IPR027417 -
Trre5g03507 133 Gene3D - 2 127 IPR027417 -
Trre5g03507 133 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 41 70 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03507 Trre-Chr5 32620796 32622226 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03507 42 112 Eukaryotic Initiation Factors Gene Family AT3G19760 28.169 3.98e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03507 K14806 - rcu:8260319 153.295