Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03478 ATGGAGATTGGTTTGGATAGTAGTAAATTACAATTACAACCACAAAACTTGAAGCAAGAACAAAAGCTGCTGCAACAGCAGGAGCAACATTTTCATGTGTTGGCAGTAGATGATAGTGTCATTGATAGGAAGCTTCTAGAGAGACTCTTTAGAGGTTCTTCATGCAAAGTTACCTGTGTGGACTCTGGAGATAAGGCTTTGAAATATCTTGGACTGAATAATATTGATGAACAACTTAATAATAATAATTCTTCATCAACAAAATCTGTATTAGAATCATCATCTCCTACTCTTCCTCAACCATTTCAGCTGCAAGAGAGAATTAGCAAAGTGAATTTGATCATGACAGATTATTGCATGCCTGGGATGAGTGGCTATGATTTACTTAAAAGAGTCAAGGGATCTTCTTGGAAAGATGTTCCTGTTGTGATCATGTCATCAGAAAATGTACCTTCCAGAATTAGCATGTGCTTGGAAGAAGGTGCAGAAGAATTTCTATTGAAACCTCTTCAGTTATCAGATTTGCAGAAGCTTCAGCCATACTTCCTTAAATCCCTAGACAATTCTTCTGATGAACAAGAATCTGCAAATAGTTCTACTTCTACCGCAGATTTTGACGATGATGATGACGATGATCTCATCGACAACAATAATAGTATTAGCAAACAGAAGGCTATGTATCCTCCAGAGAGATCAAGGCCCAAAATGAAAGTGCTGGCGCACCAAATTAAGAGTTCTTGCATATTATTAATTAGTTTAACTATGATTATGTTTCTAATTATGCTTTCTTCCTAA 795 0.3635 MEIGLDSSKLQLQPQNLKQEQKLLQQQEQHFHVLAVDDSVIDRKLLERLFRGSSCKVTCVDSGDKALKYLGLNNIDEQLNNNNSSSTKSVLESSSPTLPQPFQLQERISKVNLIMTDYCMPGMSGYDLLKRVKGSSWKDVPVVIMSSENVPSRISMCLEEGAEEFLLKPLQLSDLQKLQPYFLKSLDNSSDEQESANSSTSTADFDDDDDDDLIDNNNSISKQKAMYPPERSRPKMKVLAHQIKSSCILLISLTMIMFLIMLSS 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03478 264 SMART REC_2 31 179 IPR001789 GO:0000160
Trre5g03478 264 ProSiteProfiles Response regulatory domain profile. 32 183 IPR001789 GO:0000160
Trre5g03478 264 MobiDBLite consensus disorder prediction 188 202 - -
Trre5g03478 264 Pfam Response regulator receiver domain 109 177 IPR001789 GO:0000160
Trre5g03478 264 CDD REC_typeA_ARR 33 178 - -
Trre5g03478 264 Gene3D - 32 227 - -
Trre5g03478 264 PANTHER TWO-COMPONENT RESPONSE REGULATOR 29 219 IPR045279 GO:0009736
Trre5g03478 264 MobiDBLite consensus disorder prediction 188 233 - -
Trre5g03478 264 SUPERFAMILY CheY-like 31 178 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03478 Trre-Chr5 31967315 31970638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03478 28 185 Response Regulator Gene Family AT3G57040 56.604 1.95e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre5g03478 Response_reg 9.6e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03478 K14492 - gmx:100801334 283.108