Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03464 ATGGTGTTTGACGGAGAAGCGGCGGCGGCGGTGGTGAAGGAGATGAGGTTGAGCTTCAATTCTGGTAAGACAAGAAGTTATGAATGGAGAATATCACAGGTGAAGGCTTTTTTGAAGATGGTTGTTGAACAAGAGGATCAAATTGTTGAAGCTCTTCGTTCTGATCTTGCTAAACCACCACTTGAAACCGTTGTCTATGAGATTGGTATGTTTAAGAACTCATGTGAAGTCACTCTAAGGGAATTGAAACAATGGATGACTCCAGAAAAGGCTAAAACTTCAATCACAACTTTTCCTTCTTCAGCTGAAATAGTACCTGAACCACTTGGTGTTGTGCTAGTCATCTCTGCATGGAACTATCCATTTTTGTTGTCCCTTGATCCAGTTGTTGGAGCTATAGCAGCTGGTAATGCTGTGGTTCTAAAACCATCGGAAATTGCTCCAGCCTCCTCTGCACTGTTGGCAAAATTGTTAGGGGAGTACATGGATAACTCATGTGTAAGAGTTGTCGAGGGTGCAGTCGATGAAACTACTGCATTGTTGCAACAAAAGTGGGACAAAATTTTATATACAGGTAATGGAAAAGTGGGAAGGATAGTGATGGCTGCTGCTGCAAAACACCTTACACCAGTTATTCTAGAGCTCGGAGGAAAATCTCCAACTGTTGTAGATTCAAATGTCAATTTAGAGGTTACGGCTAGGCGGATAATTTCAGGCAAGTGGGGGTGCAACAATGGACAAGCCTGCATTTCTCCTGATTACGTTATAACAACAAAAGACTTTGCTCCCAAATTGGTAGACGCCTTGAAAATTGAATTAGAAAACTGCTTTGGAAAGAATCCAATAGAATCAGTTGATTTGTCACGCATTGTGAGTTCTAACCACTTTGCTCGCTTGACAAAGTTCTTGGACGATGATAAGGTTTCTGGCAAGATTGTTTATGGAGGTGAAAAGGATGAAAGCAAATTGAGGATTGCTCCGACTCTTTTATTAGATGTTCCGCGAGATTCTCTTATAATGAGTGAGGAGATCTTTGGTCCATTGCTTCCCATCATCACGGTGAATAAGCTGGAAGAAAGTTTCGATTTCATCAACGAAGGAACAAAGCCGCTTGCTGCATATTTATTTACAAATGACAATAAGTTCAAGGAGGAATTTGTGAAGAATGTTTCTGCTGGGGGTTTGCTTATTAATGACACTGTCTTACATCTCGTGGTTCATACTTTGCCCTTTGGCGGAGTTGGGGAGAGTGGAATGGGTGCATACCATGGAAAATTCTCCTTTGATGCCTTTACTCACAGAAAGGCAGTTCTTTATCGCGGTTTTACAGGCGATGGGTCAATAAGGTACCCACCTTACACTGATACTAAGCAGAAAACGATGAAGGCTCTAGTCGCCGGTGATGTTACTGGTGTAGTCCGTGCTCTTTTTGGATGGTCCTAG 1443 0.422 MVFDGEAAAAVVKEMRLSFNSGKTRSYEWRISQVKAFLKMVVEQEDQIVEALRSDLAKPPLETVVYEIGMFKNSCEVTLRELKQWMTPEKAKTSITTFPSSAEIVPEPLGVVLVISAWNYPFLLSLDPVVGAIAAGNAVVLKPSEIAPASSALLAKLLGEYMDNSCVRVVEGAVDETTALLQQKWDKILYTGNGKVGRIVMAAAAKHLTPVILELGGKSPTVVDSNVNLEVTARRIISGKWGCNNGQACISPDYVITTKDFAPKLVDALKIELENCFGKNPIESVDLSRIVSSNHFARLTKFLDDDKVSGKIVYGGEKDESKLRIAPTLLLDVPRDSLIMSEEIFGPLLPIITVNKLEESFDFINEGTKPLAAYLFTNDNKFKEEFVKNVSAGGLLINDTVLHLVVHTLPFGGVGESGMGAYHGKFSFDAFTHRKAVLYRGFTGDGSIRYPPYTDTKQKTMKALVAGDVTGVVRALFGWS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03464 480 FunFam Aldehyde dehydrogenase 217 417 - -
Trre5g03464 480 PIRSF ALDH 2 475 IPR012394 GO:0006081
Trre5g03464 480 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 213 220 IPR029510 GO:0016491
Trre5g03464 480 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 217 417 IPR016163 GO:0016620
Trre5g03464 480 FunFam Aldehyde dehydrogenase 16 220 - -
Trre5g03464 480 Pfam Aldehyde dehydrogenase family 6 437 IPR015590 GO:0016491
Trre5g03464 480 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 18 435 IPR016162 GO:0016491
Trre5g03464 480 PANTHER ALDEHYDE DEHYDROGENASE 7 472 IPR012394 GO:0006081
Trre5g03464 480 SUPERFAMILY ALDH-like 10 443 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03464 Trre-Chr5 31644692 31650198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03464 68 478 Aldehyde Dehydrogenase Gene Family AT1G44170 70.803 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03464 K00128 - gmx:100783726 794.653