Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03461 ATGGCGGAAGAGACCCATCCTATGGAAATTGACGTCGCCGATAAGGGAAAATCCGTCATTGCCGCCGGTAACCCTTCCTACGGTGGCAAGGCTTCTCTCTGGGTCGAAAAGTACCGTCCTCAGTCCCTCGACGACGTCGCTGCTCACCGTGACATTGTCGACACAATTGATAGATTGACTACTGAGAATAGATTACCACATCTTCTGTTGTATGGTCCCCCTGGAACGGGAAAAACATCAACGATTCTCGCTGTGGCACGCAAATTATACGGCGCGCAATATAGAAAGATGATTTTGGAGCTTAATGCTTCTGATGATAGAGGAATTGATGTTGTTAGAGAGCAGATTCAAGATTTTGCTAGCACCTCATCATTTTTTGGCGTCAAGACCTCTGTAAAACTGATCTTGTTAGATGAAGCTGATGCCATGACTAAGGATGCTCAATTTGCATTACGTAGAGTTATTGAGAAATATACAAAGGGCACTAGGTTTGCACTTATCTGTAATCATGTAAACAAGATTATCCCAGCATTGCAATCAAGATGCACCCGGTTTCGGTTTGCCCCTCTTGATGCTGTCCATGTCACCGAAAGACTGAGACATGTTATTAATGCTGAAAGGCTTGATGTTGAAGATAGTGGCTTATCTGCTCTTGTTCGGCTTAGCAATGGGGATATGAGAAAGGCATTGAATATTCTTCAGTCAACACATATGGCCTCTCCGAAGATTACAGAAGAAGCTGTTTACCTTTGCACGGGAAATCCTTTGCCCAAAGACATTGAGCAAATATCTTACTGGCTTCTAAATGAACAATATTCAGATAGCTTTAAAAGAATATATGATATGAAAACAAGGAAAGGACTGGCTCTGATTGATATTGTAAGAGAAGTGACAATGTTTGTCTTTAAGATTAAGATGCCTCCAGCCGTTCGAGTGCAGTTAGTGAATGATTTGGCTGACATAGAGTACAGATTAACTTTTGGGTGCAACGATAAGCTTCAGCTTGGATCAGTTGTTGCTTCATTTACACGTGCTAGATCTGCATTGGTTGCAGCTGCTGCTGCATAA 1068 0.4251 MAEETHPMEIDVADKGKSVIAAGNPSYGGKASLWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYRKMILELNASDDRGIDVVREQIQDFASTSSFFGVKTSVKLILLDEADAMTKDAQFALRRVIEKYTKGTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLRHVINAERLDVEDSGLSALVRLSNGDMRKALNILQSTHMASPKITEEAVYLCTGNPLPKDIEQISYWLLNEQYSDSFKRIYDMKTRKGLALIDIVREVTMFVFKIKMPPAVRVQLVNDLADIEYRLTFGCNDKLQLGSVVASFTRARSALVAAAAA 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03461 355 SMART AAA_5 64 193 IPR003593 GO:0016887
Trre5g03461 355 Gene3D - 193 254 - -
Trre5g03461 355 Gene3D - 28 189 IPR027417 -
Trre5g03461 355 Gene3D - 255 353 - -
Trre5g03461 355 CDD AAA 52 189 - -
Trre5g03461 355 Pfam Replication factor C C-terminal domain 255 341 IPR013748 -
Trre5g03461 355 Pfam ATPase family associated with various cellular activities (AAA) 68 188 IPR003959 GO:0005524|GO:0016887
Trre5g03461 355 FunFam Replication factor C subunit 5 192 254 - -
Trre5g03461 355 FunFam Replication factor C subunit 5 255 352 - -
Trre5g03461 355 CDD HLD_clamp_RFC 190 252 - -
Trre5g03461 355 SUPERFAMILY post-AAA+ oligomerization domain-like 255 345 IPR008921 GO:0003677|GO:0006260
Trre5g03461 355 FunFam Replication factor C subunit 5 27 190 - -
Trre5g03461 355 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 34 336 - -
Trre5g03461 355 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 248 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03461 Trre-Chr5 31623011 31629696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03461 1 353 Core DNA Replication Machinery Family AT1G77470 74.797 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03461 K10756 - gmx:100782652 598.201