Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03460 ATGGCATCCGAGCTTCAATTGCCACCGGGCTTCAGATTCCATCCTACCGATGAGGAGCTCGTGATGCACTATCTCTGCCGGAAATGCACTTCCCAGCCTATCGCCGTTCCGATCATCGCCGAAATTGATCTCTATAAATATGATCCTTGGGACCTTCCTGGTATGGCTTCTTATGGAGAAAAGGAATGGTACTTTTTCTCGCCTCGAGACAGGAAATATCCGAACGGTTCAAGGCCGAACCGGGCGGCTGGGTCTGGATATTGGAAGGCAACCGGGGCGGATAAACCCATAGGTCACCCTAAACCGGTTGGGATCAAAAAAGCTTTGGTGTTTTACGCGGGTAAAGCACCCAAAGGTGATAAAACCAATTGGATCATGCATGAGTATCGTTTGGCTGACGTAGATCGATCCATTCGCAAAAAGAACAGCTTAAGGTTGGATGATTGGGTGCTTTGCCGTATTTACAACAAGAAGGGTACTATCGAGAAACAACCAAACAGCGGTGTTATTAGCCGGAAAATTGAACACTCTGAAATCGAAGACAAGAAGCCAGAGATTCTGACACGTGGAGGCGGTCTTCCGCCACATCCTCCGCCACAAACAGCGGCAGGAATTAGGGATTACATGTATTTTGACACGTCGGATTCTATCCCTAAGCTGCACACAGATTCGAGCTGTTCGGAACACGTGGTGTCGCCGGAGTTTGCTAGTGAGGTGCAGAGCGAGCCTAAGTGGAACGAATGGGAAAAGAACCTTGAATTTCCTTATAATTACGTGGATGCCACTCTTAGCAGTGGTTTTGGATCCCAATTTCAGGCCAATAATCAGATGTCTCCATTGCAGGATATGTTCATGTACCTACCCAAATCCTTCTGA 876 0.4783 MASELQLPPGFRFHPTDEELVMHYLCRKCTSQPIAVPIIAEIDLYKYDPWDLPGMASYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGHPKPVGIKKALVFYAGKAPKGDKTNWIMHEYRLADVDRSIRKKNSLRLDDWVLCRIYNKKGTIEKQPNSGVISRKIEHSEIEDKKPEILTRGGGLPPHPPPQTAAGIRDYMYFDTSDSIPKLHTDSSCSEHVVSPEFASEVQSEPKWNEWEKNLEFPYNYVDATLSSGFGSQFQANNQMSPLQDMFMYLPKSF 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03460 291 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
Trre5g03460 291 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Trre5g03460 291 FunFam NAC transcription factor 16 161 - -
Trre5g03460 291 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Trre5g03460 291 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Trre5g03460 291 PANTHER NAC TRANSCRIPTION FACTOR 56 7 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03460 Trre-Chr5 31619050 31620472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03460 1 291 NAC Transcription Factor Family AT1G01720 71.000 1.80e-149 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre5g03460 NAM 1.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03460 - - gmx:100805768 529.25