Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03459 ATGGAACACGAGGAGGGAAAACAATCTTCTCAAAAAAATCCATACACAGAACTTGAGGAAGTTAGCTCCGATTTTATTCTAGCAATTGGTTTGCAAGAACAAGAGTTAGAGAGAACAACATTCACAAACCTAGCAACCATTGAAAGTGAAAGTGACGAAGATGTAACCGAGTCTTCTTTTAGTAACGATGATATTGGTGATGCTGATTTTTCATTTAGTCAAGAGTTCGAAACCGATCTTCAATTTCTTGAAGACGAAGGAAGTAATATTGATGATGAAGACGATGACTACGATGAAATGGAAGAAGATGAGATTGATCCTGATGAATTATCTTATGAAGAGTTGATTGAGTTAGGAGATTTTATAGGAGAAGAAAAAAGAGGATTATCACCTAATGAAATCTCTTCTTGCTTATATCCCTATACTTGCAAAATTGCTGAAAGAAAAAGTGGAATAGATCGTTGTGTGATTTGTCAGATTGAATATGAAGATGGTGAAGCCTTAGTTGCACTTCATTGTGATCATCCTTATCATACAGATTGTATAAGCAAGTGGCTTCAAATTAAGAAAGTTTGTCCAATTTGTAACAATGAAGTTTCAACTCCTAATAAGGCTAAGAACACTTGA 627 0.3477 MEHEEGKQSSQKNPYTELEEVSSDFILAIGLQEQELERTTFTNLATIESESDEDVTESSFSNDDIGDADFSFSQEFETDLQFLEDEGSNIDDEDDDYDEMEEDEIDPDELSYEELIELGDFIGEEKRGLSPNEISSCLYPYTCKIAERKSGIDRCVICQIEYEDGEALVALHCDHPYHTDCISKWLQIKKVCPICNNEVSTPNKAKNT 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03459 208 Coils Coil 83 103 - -
Trre5g03459 208 FunFam E3 ubiquitin ligase BIG BROTHER-related 121 202 - -
Trre5g03459 208 ProSiteProfiles Zinc finger RING-type profile. 155 196 IPR001841 -
Trre5g03459 208 MobiDBLite consensus disorder prediction 47 68 - -
Trre5g03459 208 Pfam Ring finger domain 154 196 IPR001841 -
Trre5g03459 208 SMART ring_2 155 195 IPR001841 -
Trre5g03459 208 SUPERFAMILY RING/U-box 154 202 - -
Trre5g03459 208 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 208 IPR013083 -
Trre5g03459 208 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 32 200 IPR033276 GO:0004842|GO:0016567|GO:0046621
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03459 Trre-Chr5 31608258 31608884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03459 102 199 C3H Transcription Factor Family AT3G63530 49.505 8.11e-30 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03459 K19045 - gmx:100526881 286.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03459 5 31608258 31608884 Trre9g04370 9 51531898 51544013 ECH
Trre5g03459 5 31608258 31608884 Trre5g03459 5 31608258 31608884 ECH
Trre5g03459 5 31608258 31608884 Trre9g04370 9 51531898 51544013 PCT