Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03450 ATGGCAACACTGTCGAAATCCATGTTTAGGATATATGGAGACGAAGAACGATTTAGGAAATCCATGAACTTTGGGTTTATGAAATTGAAATTGAGGTTGGATTGTGTTTACTTTAAGTGTCAGAAATCGAAGGTTTACTTCAAGAGGTTCCAAGTCAAGTTCAAGAGAAGAAGAGAGGGTAAGACTGACTACCGTGCTAGGATTCGCTTGATTAATCAAGATGAGAACAAGTACAACACCCCAAAGGTCATTGGGCCAGACATCTCCAAGGTAAGCAGATGA 282 0.4007 MATLSKSMFRIYGDEERFRKSMNFGFMKLKLRLDCVYFKCQKSKVYFKRFQVKFKRRREGKTDYRARIRLINQDENKYNTPKVIGPDISKVSR 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03450 93 Gene3D - 35 84 - -
Trre5g03450 93 PANTHER RIBOSOMAL PROTEIN L5-RELATED 37 82 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Trre5g03450 93 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 48 82 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Trre5g03450 93 SUPERFAMILY Translational machinery components 46 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03450 Trre-Chr5 31325337 31327193 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03450 36 82 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 78.723 1.51e-20 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03450 K02932 - gmx:100785668 80.4925