Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03446 ATGTCAGTGGTGAGAAAGGATAGATCTGATTGGGAGCTTGTTACCCCATGGTTTAAATTCAATGGGAAACCTTACAGAACAGTGCTCGAAATATTGCGGAACAACTCAAAATTGGAAGCCCTATATGCTTATGGAATGGTGTCCGTCTTTGCACCAGCTATTATCTGTTTATATTTTAAATATTTTAATTTTAACATGAAACTGTCTTACCTTTGTATGTGTGGAATAGGATTCAAACCTCGAGCTTTCCAGTTTTGTAAGCAGTATAAACGAACGACAGAGTTTCGTAGACTTTGCGAAATCATTATAAACCATTTGGCTAATCTTAACAAATATCGGGACCAACGAGACCGACTTGATCTTTCTGCTTCTGAAAGCTTGCAATTGTACCTTGATACAAGATTCGAGCAGCTGAAAATTGCCACTGAGCTTGAACTCTGGCAGGAAGCCTTTAGATATGTTGAAGATATACATGGGTTGATGTTAATGGTCAAGAAAACTCCAAAACCATCCCTGATAGCAGAGAAATGCTCTCAAGGTCATCACTTCTCGCTGAACTGGTAA 564 0.3883 MSVVRKDRSDWELVTPWFKFNGKPYRTVLEILRNNSKLEALYAYGMVSVFAPAIICLYFKYFNFNMKLSYLCMCGIGFKPRAFQFCKQYKRTTEFRRLCEIIINHLANLNKYRDQRDRLDLSASESLQLYLDTRFEQLKIATELELWQEAFRYVEDIHGLMLMVKKTPKPSLIAEKCSQGHHFSLNW 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03446 187 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 6 175 IPR027512 GO:0005852
Trre5g03446 187 Gene3D UVR domain 117 170 - -
Trre5g03446 187 FunFam Eukaryotic translation initiation factor 3 subunit A 116 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03446 Trre-Chr5 31245056 31246881 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03446 6 173 Eukaryotic Initiation Factors Gene Family AT4G11420 67.857 1.75e-65 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03446 K03254 - mof:131153097 219.55