Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03444 ATGAGTGTGTATGATCCTATTCACCAGATTAATATGTGGGGAGAAGGTTTCAAAAGTAACGGAAATTTAAGCGCATCCATGCCGTTAATTGATGAGGTGGACTTGAAATTTGATAGTAGTCAGTCAGAAGATGCTTCTCATGGTATACTCGGAACATCTAACAAGTATGATCAAGAAGCTAGTAGACCTATTGATAAGATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGCCGTCTGAGGAAAAAGGCTTATGTGCAGCAATTAGAATCAAGTCGTTTGAAGTTGGTGCAGTTGGAGCAAGAGCTTGAACGCGTAAGACAGCAGGGAATGTATATGAGTGGTGGATTGGATTCTAATAATATGTGTTTTGCTGGACCTATGAATTCAGCCTTTGAGATGGAGTATGGACATTGGGTTGATGAGCAAAACCGGCAAATTTCGGAAATGAGAAATGCTTTAAACTCGCATATTAGTGACATAGAGCTCAGGATTCTGGTTGATGGTATGATGAATCACTATGCTGAAATCTATCGCATGAAATCTGCGGCTGCAAAAGCAGATGTTTTTTATGTTATGTCCGGTATGTGGAAAACAACAGCTGAACGGTTTTTCTTGTGGATCGGTGGTTTTCGCCCCTCTGAGCTTCTCAAGATTCTTGGTCCAATGATTGAACCCTTGACAGAGCAGCAACGATTAGATATTGATAACCTCGGACAATCGTGTCAACAAGCCGAAGATGCTCTTTCACAAGGCATGGAAAAACTCCGGCAAACACTTGCTGATAGTGTAGCAGCTGGACAATTCATTGATGGAACGTATATTCCGCAGATGGCCACTGCAATGGAGAAGTTAGAAGCTCTTGTGTGCTTTGTGAATCAGGCTGACCATCTCCGGCAGGAAACCTTGCAGCAAATGTCGCGAATACTTACAATCCGTCAGTCAGCTCGGTGCTTACTTGCTTTAGGAGAATATTTCCAACGCCTAAGGGCTTTGAGCTCACTATGGTCTAATCGACCCCGTGAACCTGCTTAG 1044 0.431 MSVYDPIHQINMWGEGFKSNGNLSASMPLIDEVDLKFDSSQSEDASHGILGTSNKYDQEASRPIDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLVQLEQELERVRQQGMYMSGGLDSNNMCFAGPMNSAFEMEYGHWVDEQNRQISEMRNALNSHISDIELRILVDGMMNHYAEIYRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKILGPMIEPLTEQQRLDIDNLGQSCQQAEDALSQGMEKLRQTLADSVAAGQFIDGTYIPQMATAMEKLEALVCFVNQADHLRQETLQQMSRILTIRQSARCLLALGEYFQRLRALSSLWSNRPREPA 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03444 347 MobiDBLite consensus disorder prediction 43 58 - -
Trre5g03444 347 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 64 108 IPR004827 GO:0003700|GO:0006355
Trre5g03444 347 PANTHER TRANSCRIPTION FACTOR TGA9 2 345 - -
Trre5g03444 347 CDD bZIP_HBP1b-like 66 118 - -
Trre5g03444 347 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 69 84 IPR004827 GO:0003700|GO:0006355
Trre5g03444 347 Gene3D - 65 117 - -
Trre5g03444 347 FunFam BZIP family transcription factor 65 114 - -
Trre5g03444 347 Coils Coil 143 163 - -
Trre5g03444 347 ProSiteProfiles DOG1 domain profile. 132 342 IPR025422 GO:0006351|GO:0043565
Trre5g03444 347 MobiDBLite consensus disorder prediction 43 62 - -
Trre5g03444 347 SUPERFAMILY Leucine zipper domain 66 109 IPR046347 GO:0003700|GO:0006355
Trre5g03444 347 SMART brlzneu 62 126 IPR004827 GO:0003700|GO:0006355
Trre5g03444 347 Pfam bZIP transcription factor 66 104 IPR004827 GO:0003700|GO:0006355
Trre5g03444 347 Coils Coil 85 112 - -
Trre5g03444 347 Pfam Seed dormancy control 149 223 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03444 Trre-Chr5 31207886 31209723 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03444 1 347 Calmodulin-binding Proteins AT5G65210 67.606 3.37e-176 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre5g03444 DOG1 9.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03444 K14431 - gmx:100793353 599.742