Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03443 ATGAGTGTGTATGATCCTATTCACCAGATTAATATGTGGGGAGAAGGTTTCAAAAGTAACGGAAATTTAAGCGCATCCATGCCGTTAATTGATGAGGTGGACTTGAAATTTGATAGTAGTCAGTCAGAAGATGCTTCTCATGGTATACTCGGAACATCTAACAAGTATGATCAAGAAGCTAGTAGACCTATTGATAAGATACAAAGACGTCTTGCACAAAATCGAGAGGCTGCTCGTAAGAGCCGTCTGAGGAAAAAGGCTTATGTGCAGCAATTAGAATCAAGTCGTTTGAAGTTGGTGCAGTTGGAGCAAGAGCTTGAACGCGTAAGACAGCAGGGAATGTATATGAGTGGTGGATTGGATTCTAATAATATGTGTTTTGCTGGACCTATGAATTCAGGAATTGCAGCCTTTGAGATGGAGTATGGACATTGGGTTGATGAGCAAAACCGGCAAATTTCGGAAATGAGAAATGCTTTAAACTCGCATATTAGTGACATAGAGCTCAGGATTCTGGTTGATGGTATGATGAATCACTATGCTGAAATCTATCGCATGAAATCTGCGGCTGCAAAAGCAGATGTTTTTTATGTTATGTCCGGTATGTGGAAAACAACAGCTGAACGGTTTTTCTTGTGGATCGGTGGTTTTCGCCCCTCTGAGCTTCTCAAGATTCTTGGTCCAATGATTGAACCCTTGACAGAGCAGCAACGATTAGATATTGATAACCTCGGACAATCGTGTCAACAAGCCGAAGATGCTCTTTCACAAGGCATGGAAAAACTCCGGCAAACACTTGCTGATAGTGTAGCAGCTGGACAATTCATTGATGGAACGTATATTCCGCAGATGGCCACTGCAATGGAGAAGTTAGAAGCTCTTGTGTGCTTTGTGAATCAGGCTGACCATCTCCGGCAGGAAACCTTGCAGCAAATGTCGCGAATACTTACAATCCGTCAGTCAGCTCGGTGCTTACTTGCTTTAGGAGAATATTTCCAACGCCTAAGGGCTTTGAGCTCACTATGGTCTAATCGACCCCGTGAACCTGCTTAG 1053 0.4311 MSVYDPIHQINMWGEGFKSNGNLSASMPLIDEVDLKFDSSQSEDASHGILGTSNKYDQEASRPIDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLVQLEQELERVRQQGMYMSGGLDSNNMCFAGPMNSGIAAFEMEYGHWVDEQNRQISEMRNALNSHISDIELRILVDGMMNHYAEIYRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKILGPMIEPLTEQQRLDIDNLGQSCQQAEDALSQGMEKLRQTLADSVAAGQFIDGTYIPQMATAMEKLEALVCFVNQADHLRQETLQQMSRILTIRQSARCLLALGEYFQRLRALSSLWSNRPREPA 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03443 350 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 64 108 IPR004827 GO:0003700|GO:0006355
Trre5g03443 350 CDD bZIP_HBP1b-like 66 118 - -
Trre5g03443 350 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 69 84 IPR004827 GO:0003700|GO:0006355
Trre5g03443 350 Gene3D - 65 117 - -
Trre5g03443 350 ProSiteProfiles DOG1 domain profile. 135 345 IPR025422 GO:0006351|GO:0043565
Trre5g03443 350 Pfam Seed dormancy control 152 226 IPR025422 GO:0006351|GO:0043565
Trre5g03443 350 Pfam bZIP transcription factor 66 104 IPR004827 GO:0003700|GO:0006355
Trre5g03443 350 PANTHER TRANSCRIPTION FACTOR TGA9 2 348 - -
Trre5g03443 350 SUPERFAMILY Leucine zipper domain 66 109 IPR046347 GO:0003700|GO:0006355
Trre5g03443 350 SMART brlzneu 62 126 IPR004827 GO:0003700|GO:0006355
Trre5g03443 350 Coils Coil 146 166 - -
Trre5g03443 350 FunFam BZIP family transcription factor 65 114 - -
Trre5g03443 350 Coils Coil 85 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03443 Trre-Chr5 31207886 31209723 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03443 1 350 Calmodulin-binding Proteins AT5G65210 68.451 3.27e-180 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre5g03443 DOG1 9.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03443 K14431 - gmx:100793353 608.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03443 5 31207886 31209723 Trre5g03443 5 31207886 31209723 ECH