Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03422 ATGGCTACTGCAATCACTTGGAGATTTTCTGGCAACAATGGCACAACCCTTGCTTCTAATGATTTGGAAAGAAATGGTGATGGCAAGGCTCAAGATTCAGAGGCTCCAACTCCCCATTCTGCTCTGAAAATGGGATTGAGAGAACGTAGCAGCAGCGGGATGGAGGATGCAGATGGGACATTAGCAAGTATTGCCCAATGCATTGAGAAGCTACGTCAGGGCTCATCTTCTATGCAAGAGAAAGAGTATTCCTTGAAGCAATTATCGGAGCTTATTGATACGCGTGAAAATGCTTTTAGTGCAGTTGGATCTCATTCTCAAGCAGTTCCGGTGCTTGTTTCCCTTCTCCGGTCAGGGTCATTGAATGTGAAGATACAGGCAGCAACTGTCTTGGGCTCACTCTGTAAAGAAAATGAGTTAAGGGTGAAAGTCTTGCTTGGAGGATGTATTCCTCCTTTGCTCGGTCTACTAAAGTCTAGTTCTGAAGAAGGTCAAGTAGCTGCTGCAAAGACAATTTTTGCTGTCTCTCAAGGTGATGCCAAAGATCATGTTGGATCAAAAATCTTTTCTACCGAAGGAGTTGTTCCAGTGCTCTGGGAACAGCTGCAAAAGGGCCTAAAGAATGGAAGTGTAGTAGATAGTTTATTGACTGGAGCATTGAAAAATCTCTACAGCAGTACTGAGAGATTCTGGAATTCGACAATACAGGCTGGAGGAGTGGAGATACTGCTGAAGTTACTGACAACAGGACAGTCTAGCACTTTAGCTAATGTGTGCTTTTTACTTGCCTGTATGATGATGGAAGATGCATCTTTTTGTTCAAAGGTATTGAAAGCAGATGCAACAAAACAACTCCTCAAACTTTTAGGCCCTGGTAATGATGCCCCAGTTAGAGCTGAAGCAGCTGGTGCTCTTAAGTCTCTATCAGCCCAGTGCCAAGATGCTAGGAAAGAGATAGCTAATTCCAATGGCATTCCTGCTTTAATTAATGCTACCATCGCTCCTTCCAAAGAGTTCATGCAAGGTGAGTATGCTCAAGCGATACAGGAGAATGCTATGTGTGCTCTCGCGAACATCTCTGGTGGTTTGTCTTATGTGATCTCCAGCCTTGGTCAAAGCCTTGAGTCATGCTCCTCACCGACCCAAACTGCTGACACATTGGGGGCTTTAGCTTCAGCTCTTATGATATATGATGACAAGGCAGAATCTACTAGAGCATCAGATCCTTTGGCAGTTGAGCAGACATTACTTGAGCAATTCAAATCACGCTCTCCCTTCCTTGTGCAGGAAAGGACCATTGAAGCTCTTGCTAGTTTGTATGGAAATCCTATACTCTCACTTAAACTTGCAAATTCTGATGCAAAGCGTCTGCTTGTTGGTCTAATAACAATGGCCGCTAATGAAGTGCAAGATGAGCTTCTAAAAGCTCTCTTGACACTGTGCAATAGTGAGTGCAGTCTATGGCGTGCACTTCAAGGTCGTGAAGGAGTTCAGCTATTGATATCTCTTTTGGGGCTTTCATCAGAACAGCAACAAGAATGTGTTGTTGCCCTGCTCTGTCTTTTGTCTAATGAAAATGATGAAAGTAAATGGGCCATTACTGCTGCTGGTGGTATACCTCCACTTGTTCAGATTTTGGAGTCAGGATCTGCAAAAGCAAAGGAAGACTCGGCAACAATCCTCAGGAACCTATGTGATCACAGTGAGGATATACGTGCTTGTGTCGAAAGTGCTGATGCAGTTCCTGCATTGTTGTGGCTGTTGAAGAATGGAAGCCCAAATGGGAAGGAGATTGCAGCAAAGACCTTGAATCACTTAATTCATAAATCTGATACGGCAACTATCAGTCAGCTTACAGCATTATTGACTAGTGATCTACCTGAGTCTAAGGTTTATGTTTTAGATGCTTTGAGGAGTATGCTTTCTGTTGTTTCTCTCAGTGACCTTCTACGTGAAGGTAGTGCTGCCAATGATGCGATCAATACAATGATAAAGTTATTGAGCTCTACAAAGGAAGAAACTCAGGCAAAGTCAGCATCAGCTTTGTCAGGAATTTTTGAAACAAGGAAAGATTTGAGAGAAAGCAATATTGCTGTTAAAACTCTTTGGTCAGCCATGAAGTTGCTTAATATTGAATCTGGAAGTATCTTAGTGGAGTCCTCACGCTGCCTAGCTGCAATATTTCTTTCCATCAAAGAGAACAGAGAGGTGGCTGCTAATGCTGGTGATGCATTATCCTCCCTAGTTGCATTAGCTAGCTCTTCAGATTTGGAAGTAGCAGAGCTGGCTACTTGTGCTTTGGCAAACCTCTTTTTGGATAGTGAAATTGCTGAGAATGCTTTTGCGGAGGAAGTTATTTTGCCTGCTACCAGAGTATTGCGCGAAGGCACAAAATCTGGAAAAACACATGCAGCAGCAGCAATCGCTCGCCTTTTGCATTCTAGGCAAGTTGATTATGCTGTAAATGATTGTGTGAATCGTGCCGGTACTGTTCTTGCACTAGTTTCTTTCTTGGGTTCTGTTATTAATGAACCTGTTGCAACAGCAGAGGCTCTAGAAGCACTTGCCATTCTGTCCAGGTTGAAAGAGACCACCGCACTTAGTAAACCGGCTTGGAGGATTTTGGTCGAATTCCCTAAAAGCATAACCCCAGTAGTTCTGTCAATTGCTGATTCTACACCAGTGCTGCAGGATAAAGCTATTGAAATAATATCTCGATTATGTAAGGATCAGCCTTCTGTGTTAGGAGAGACTGTTGCTACTGCATCTGGATGTATATCTTCAATAGCTAAGAGGATCATCAATTCCACTTCTACAAATATGAAGGTCAAAATTGGGGGAGCTGCAATTCTTATTTGTGCTGCTAAAGAAAATCACCAGAGGCTTGTGGAGGATCTAAACATATCAAACTTGTGTGCTAATCTTGTACAGTCGCTTGTTGATATGCTTATTTCTGCACAGGCTACTTCAGTTAATCAGGATGGTGTCAACAAGGAAGTTATCAGCATTTGCAGGCATACAAAAGACACCAATGATGGTAAATTGACCAACATCACCACCATTATATCTGGTGCTGATGTAGCTTTATGGTTACTGTCTGTTCTTGCTTGTCATGACGAAAAAAGTAAAATTGCAATAATGGAGGCTGGAGCGATTGAGATTCTCACCGACAGGATTGCAAATTTTTCCTCTCAGTACAGCCAGATTGACTATAAAGAAGATAGCAGCATGTGGATTTGTGCTATGTTGTTGGCAATATTATTTCAAGATAGGGATATCATACGAGCACATGCAACAATGATATCTATTCCAGCCCTTGCCAATTTATTGAAGTCAGAGGAATCAGCAAACAAATATTTTGCTGCACAATCAATAGCTAGCCTAGTCTGTAATGGTAGCAGGGGAACACTTCTATCTGTGGCAAATTCTGGTGTGGCAGGTGGACTTATCTCCTTGCTTGGCTGTGCTGATGTTGACATACAGGATCTTCTGGAATTGTCAAATGAATTTTCATTGGCACCTTATCCTGATCAAGTTGCTCTTGAGAGGTTGTTTAGAGTCGATGACATTAGAGTTGGTGCCACTTCTCGGAAGGCAATACCTGCCCTAGTTGATCTGCTTAAACCAATTCCAGATCGCCCAGGAGCACCATTTTTAGCACTTGGGATTTTGACTGACCTTGCTAGAGATTGTCCATCAAATAAGATTGTCATGGTAGAGTCTGGGGCCATAGAGGCACTTACTAAGTATCTTTCACTGGGTCCGCAAGATGCAATTGAAGAAGCTGCTACAGATCTGTTAGGAATTTTGTTTAGTAGTGCTGAGATAAGGAAACATGAGTCGGCATTTGGTGCTGTAACTCAACTTGTAGCTGTGCTACGTTTAGGAGGAAGAGCTGCAAGGTATAGTGCTGCTAAAGCCTTGGAAAGTTTATTTTTGGCTGACAACATTAGAAATGCAGAGACAGCCCGACATGCTGTTCAACCCTTGGTGGAGATTCTTAATACTGGCTTAGAGAGAGAGCAACATGCTGCGATTGCTGCGTTAGTTAAGTTACTGAGTGAAAATCCTTCAAGAGCACTGGCTGTTGCTGATGTTGAGATGAATGCAATTGATGTTCTTTGCAGAATTCTTTCATCAGACTGTTCAATGGACCTCAAAGGGGATGCTGCTGAACTATGTTGTGTTCTTTTTGGAAATACAAGGATTCGATCCACAATGGCTGCTGCACGGTGTGTTGAACCTCTGGTCTCTCTCCTTGTGAGTGAGTTTAGTCCAGCTCATCATTCAGTTGTCCGGGCATTGGATAGGCTTGTTGGTGATGAGCAATTGGCTGAGTTAGTTGCTGCACATGGTGCAGTTATTCCTCTCGTTGGCCTACTTTTTGGTAGGAATTTTGTACTTCATGAGGCCATTTCCAGAGCACTGGTCAAGTTAGGAAAAGATCGACCTGCTTGTAAAATGGAAATGGTGAAATCTGGAGTCATTGAAAGCATACTTGACATCCTTCATGAAGCACCTGATTATCTCTGTGCAGCATTTGCTGAATTGTTACGCATATTGACCAATAATGCTAGCATAGCCAAAGGACCATCAGCTGCTAAAGTGGTTGAACCCCTGTTCTTTTTGCTAACAAGACAAGAATTTGGGCCCGATGGACAACATAGTGCATTGCAGGTTTTGGTTAATATCTTAGAGCATCCGCAATGCCGTTCTGATTACACGTTAACTTCTCACCAAGCTATTGAACCACTCATCCCTTTGCTTGATTCTCCAATAGAAGCAGTCCAACAATTGGTTGCTGAGCTTCTCTCACATCTACTTTTAGAAGAACACCTTCAGAAGGATCCAGTGACACAGCAAGTAATTGGACCTCTTGTGCGAGTTCTTGGTTCTGGCATACAAATATTGCAGCAGAGAGCTTTGAAGGCCCTTGTCAGTATTGCAATTGTATGGCCAAATGAAATTGCAAAAGAGGGAGGTGTTATTGAAATTTCCAAAGTGATATTGCAAGCTGACCCTTCCATTCCGCATGCTTTATGGGAGTCTGCTGCCTCTGTTTTGGCAAGTATTCTGCAATTTAGTTCTGAATTCTACTTGGAAATTCCTGTTGCCGTTTTGGTAAGGTTGCTTCAATCTGGATCAGAGAGCACAATTAGTGGTGCATTAAATGCTCTTCTTGTGTTGGAAAGTGATGATGAATCTAGCGCAGCCGCAGAGGCAATGGCTGAAAGTGGTGCTATAGAGGCTCTCTTGGAGCTCCTTAGATCTCATCAGTGTGAGGACACTGCTGCAAGACTCTTAGAAGTATTGCTTAACAATGTAAAGATTAGAGAAACAAAAGTTACTAAATCAGCCATCTTACCATTATCCCAGTACCTCTTGGATCCACAAACTCAAGCACAACAAGCAAGGTTATTAGCGACTTTGGCTCTCGGTGATCTATTCCAGAATGAGGGTCTTGCTCGGACAGCTGATGCAGTCTCAGCTTGTCGTGCTTTAGTGAATGTGCTTGAAGACCAACCAACTGAAGAAATGAAAGTCATTGCCATATGTGCTCTGCAAAACCTTGTGATGTACAGTCGATCAAATAAAAGAGCAGTTGCAGAGGCCAGTGGGGTTCAGGTTATGTTGGATTTGATTGGTTCGGGTGATCCTGAAACATCTGTTCAGGCTGCAATGTTTATTAAACTTCTCTTTTCAAATCATACTATTCAAGAGTATGCTTCTAGTGAAACAGTCAGAGCAATAACCGCTGCTATTGAAAAGGATTTATGGGCTACTGGAACTGTGAACGACGAGTATCTGAAAACCTTAAATTCTCTATTTGGCGTCTACCCAAAGCTGAGAGCAACTGAACCAGCAACACTCAGCATTCCACATCTGGTTACATCCTTAAAGACAGGTTCAGAGGCTACTCAGGAAGCTGCCTTGGATGCACTTTTTCTTCTCAGGCAAGCTTGGTCAGCGTGCCCAGCAGAAGTTTCAAGAGCTCAGTCCATAGCAGCCGCTGATGCTATTCCTTTGTTACAGTACTTAATCCAGTCTGGCCCACCTAGGTTTCAGGAGAAGGCAGAGTTTCTATTGCAGTGTTTGCCTGGGACATTGGTGGTGATTATCAAGTGCGGTAATAATATGAAGCAGTCTGTTGGAAATCCGAGTGTTTACTGTAAGCTTACACTGGGAAACACTCCTCCAAGGCAAACCAAGGTGGTCTCAACTGGTCCCAACCCAGAGTGGGATGAGAGTTTCTCATGGTCCTTTGAGAGTCCTCCAAAAGGCCAGAAGCTTCATATTTCTTGCAAAAACAAGAGTAAAATGGGGAAGAGTTCATTTGGGAAAGTGACAATCCAGATTGATCGGGTGGTGATGCTGGGGGCAGTATCCGGAGAGTATACTCTGTTGCCGGAAAGTAAAAGTGGCCCCTCGAGAAATTTAGAAATAGAATTTCAATGGTCTAACAAGTGA 6468 0.4304 MATAITWRFSGNNGTTLASNDLERNGDGKAQDSEAPTPHSALKMGLRERSSSGMEDADGTLASIAQCIEKLRQGSSSMQEKEYSLKQLSELIDTRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSEEGQVAAAKTIFAVSQGDAKDHVGSKIFSTEGVVPVLWEQLQKGLKNGSVVDSLLTGALKNLYSSTERFWNSTIQAGGVEILLKLLTTGQSSTLANVCFLLACMMMEDASFCSKVLKADATKQLLKLLGPGNDAPVRAEAAGALKSLSAQCQDARKEIANSNGIPALINATIAPSKEFMQGEYAQAIQENAMCALANISGGLSYVISSLGQSLESCSSPTQTADTLGALASALMIYDDKAESTRASDPLAVEQTLLEQFKSRSPFLVQERTIEALASLYGNPILSLKLANSDAKRLLVGLITMAANEVQDELLKALLTLCNSECSLWRALQGREGVQLLISLLGLSSEQQQECVVALLCLLSNENDESKWAITAAGGIPPLVQILESGSAKAKEDSATILRNLCDHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKVYVLDALRSMLSVVSLSDLLREGSAANDAINTMIKLLSSTKEETQAKSASALSGIFETRKDLRESNIAVKTLWSAMKLLNIESGSILVESSRCLAAIFLSIKENREVAANAGDALSSLVALASSSDLEVAELATCALANLFLDSEIAENAFAEEVILPATRVLREGTKSGKTHAAAAIARLLHSRQVDYAVNDCVNRAGTVLALVSFLGSVINEPVATAEALEALAILSRLKETTALSKPAWRILVEFPKSITPVVLSIADSTPVLQDKAIEIISRLCKDQPSVLGETVATASGCISSIAKRIINSTSTNMKVKIGGAAILICAAKENHQRLVEDLNISNLCANLVQSLVDMLISAQATSVNQDGVNKEVISICRHTKDTNDGKLTNITTIISGADVALWLLSVLACHDEKSKIAIMEAGAIEILTDRIANFSSQYSQIDYKEDSSMWICAMLLAILFQDRDIIRAHATMISIPALANLLKSEESANKYFAAQSIASLVCNGSRGTLLSVANSGVAGGLISLLGCADVDIQDLLELSNEFSLAPYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGILTDLARDCPSNKIVMVESGAIEALTKYLSLGPQDAIEEAATDLLGILFSSAEIRKHESAFGAVTQLVAVLRLGGRAARYSAAKALESLFLADNIRNAETARHAVQPLVEILNTGLEREQHAAIAALVKLLSENPSRALAVADVEMNAIDVLCRILSSDCSMDLKGDAAELCCVLFGNTRIRSTMAAARCVEPLVSLLVSEFSPAHHSVVRALDRLVGDEQLAELVAAHGAVIPLVGLLFGRNFVLHEAISRALVKLGKDRPACKMEMVKSGVIESILDILHEAPDYLCAAFAELLRILTNNASIAKGPSAAKVVEPLFFLLTRQEFGPDGQHSALQVLVNILEHPQCRSDYTLTSHQAIEPLIPLLDSPIEAVQQLVAELLSHLLLEEHLQKDPVTQQVIGPLVRVLGSGIQILQQRALKALVSIAIVWPNEIAKEGGVIEISKVILQADPSIPHALWESAASVLASILQFSSEFYLEIPVAVLVRLLQSGSESTISGALNALLVLESDDESSAAAEAMAESGAIEALLELLRSHQCEDTAARLLEVLLNNVKIRETKVTKSAILPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARTADAVSACRALVNVLEDQPTEEMKVIAICALQNLVMYSRSNKRAVAEASGVQVMLDLIGSGDPETSVQAAMFIKLLFSNHTIQEYASSETVRAITAAIEKDLWATGTVNDEYLKTLNSLFGVYPKLRATEPATLSIPHLVTSLKTGSEATQEAALDALFLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKCGNNMKQSVGNPSVYCKLTLGNTPPRQTKVVSTGPNPEWDESFSWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVSGEYTLLPESKSGPSRNLEIEFQWSNK 2155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03422 2155 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 537 579 IPR000225 GO:0005515
Trre5g03422 2155 Gene3D C2 domain 2034 2155 IPR035892 -
Trre5g03422 2155 Coils Coil 298 318 - -
Trre5g03422 2155 CDD C2 2036 2126 - -
Trre5g03422 2155 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2034 2143 IPR035892 -
Trre5g03422 2155 SUPERFAMILY ARM repeat 466 642 IPR016024 -
Trre5g03422 2155 SUPERFAMILY ARM repeat 1582 2032 IPR016024 -
Trre5g03422 2155 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 2034 2155 - -
Trre5g03422 2155 MobiDBLite consensus disorder prediction 15 41 - -
Trre5g03422 2155 Pfam C2 domain 2034 2130 IPR000008 -
Trre5g03422 2155 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 29 2155 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Trre5g03422 2155 Gene3D - 823 1170 IPR011989 -
Trre5g03422 2155 Gene3D - 1531 1680 IPR011989 -
Trre5g03422 2155 Gene3D - 1401 1516 IPR011989 -
Trre5g03422 2155 Gene3D - 52 408 IPR011989 -
Trre5g03422 2155 SUPERFAMILY ARM repeat 1028 1161 IPR016024 -
Trre5g03422 2155 SUPERFAMILY ARM repeat 69 387 IPR016024 -
Trre5g03422 2155 SUPERFAMILY ARM repeat 1194 1607 IPR016024 -
Trre5g03422 2155 ProSiteProfiles C2 domain profile. 2015 2132 IPR000008 -
Trre5g03422 2155 Gene3D - 614 822 IPR011989 -
Trre5g03422 2155 Gene3D - 419 613 IPR011989 -
Trre5g03422 2155 Coils Coil 2154 2155 - -
Trre5g03422 2155 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1198 1242 IPR000225 GO:0005515
Trre5g03422 2155 Pfam Armadillo/beta-catenin-like repeat 526 566 IPR000225 GO:0005515
Trre5g03422 2155 Pfam Armadillo/beta-catenin-like repeat 105 135 IPR000225 GO:0005515
Trre5g03422 2155 SMART C2_3c 2035 2131 IPR000008 -
Trre5g03422 2155 FunFam Protein CELLULOSE SYNTHASE INTERACTIVE 1 1382 1616 - -
Trre5g03422 2155 SMART arm_5 818 860 IPR000225 GO:0005515
Trre5g03422 2155 SMART arm_5 568 608 IPR000225 GO:0005515
Trre5g03422 2155 SMART arm_5 526 566 IPR000225 GO:0005515
Trre5g03422 2155 SMART arm_5 1441 1481 IPR000225 GO:0005515
Trre5g03422 2155 SMART arm_5 1231 1272 IPR000225 GO:0005515
Trre5g03422 2155 SMART arm_5 1483 1523 IPR000225 GO:0005515
Trre5g03422 2155 SMART arm_5 94 136 IPR000225 GO:0005515
Trre5g03422 2155 SMART arm_5 1400 1440 IPR000225 GO:0005515
Trre5g03422 2155 SMART arm_5 731 772 IPR000225 GO:0005515
Trre5g03422 2155 SMART arm_5 1568 1609 IPR000225 GO:0005515
Trre5g03422 2155 SMART arm_5 1611 1650 IPR000225 GO:0005515
Trre5g03422 2155 SMART arm_5 269 310 IPR000225 GO:0005515
Trre5g03422 2155 SMART arm_5 312 361 IPR000225 GO:0005515
Trre5g03422 2155 SMART arm_5 1735 1773 IPR000225 GO:0005515
Trre5g03422 2155 SMART arm_5 1861 1901 IPR000225 GO:0005515
Trre5g03422 2155 SMART arm_5 137 177 IPR000225 GO:0005515
Trre5g03422 2155 SUPERFAMILY ARM repeat 617 979 IPR016024 -
Trre5g03422 2155 Gene3D - 1681 2033 IPR011989 -
Trre5g03422 2155 Gene3D - 1180 1400 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03422 Trre-Chr5 30926584 30935978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03422 489 621 U-box Gene Family AT2G23140 40.441 7.74e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03422 - - gmx:100816765 3638.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g05057 7 57444773 57454363 Trre5g03422 5 30926584 30935978 PCT