Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03409 ATGACTTCTTCAACAGTTGAACCCTGCAAATCTGAGGATTTTCAGGTTGACATTGAAAAGAATCAGCAGGATGTAAGGTCTCAGTGGGTGCTTAATGCACCTGAGCCCCCAAGTCCTTGGCATGTTACTATAGATTCTGTGAAGAAAACAGTTTCTAACTATAGAGAGAAAGTTTCTTCTCTATGTGATCAACCATGTAGCACACTCTTTTCAGCTTTGCAAGTTGTTTTTCCTATTCTTGTTTGGGGAAGAAACTACACTGCTGCTAAATTTAGGAAAGATATTCTTGCTGGTCTCACTATTGCTAGTCTTTGTATTCCACAGAGCATAGGGTATGCAACATTAGCAAACCTTGCTCCTCAATATGGACTTTATACGAGTGTTGTACCGCCGCTTATCTACGCTGTAATGGGAACTTCAAGAGAGATAGCAATTGGTCCAGTGGCAGTGGTTTCCTTGCTGTTATCCTCAATGGTTCAAAAATTGATAGACCCATCTACTGATCCAATTGGTTATACAAAGCTTATTTTTCTAGCTACTCTCTTTGCTGGAATCTTCCAAACCGCGTTTGGATTATTCAGGCTGGGGTTCCTTGTGGATTTTCTGTCACATGCTGCAATTGTTGGATTTGTAGCAGGAGCTGCAATTGTGATTGGGCTTCAACAGTTGAAGGGACTGTTTGGAATCACTCATTTTACAACAAAAACAGACATAATCTCTGTCATGAAAGCTGTTTGGGAAGCATTTCATAACCCGTGGAACCCTCACAATTTCTTCCTCGGAGCTTCATTCTTGGTGTTCATCCTTACAACTAGATTTGTGGGTAAAAGGAAGAAGAAATTGTTCTGGTTGGCATCAATTTCACCATTAGTATCAGTTATACTATCGACTCTGGTTGTTTTTCTAACTCGAGCCGATAAAAATGGAGTTAAAATTGTGAAACATGTCAAAGGGGGACTCAATCCAATCTCCATCAATCAGCTAGACTTTAACAGTCCCCATGTTGTAGATGTCGCGAAAATTGGACTTATTGTTGCTGTTGTTGCACTTACTGAATCTGTTGCTGTTGGACGATCTTTTGCATCCATAAAAGGATACCAACTTGATGGAAACAAAGAAATGATGTCAATAGGCTTCACAAACATCATTGGATCTCTCACATCTTGTTATGTTGCAACTGGTTCGTTCTCGCGCACCGCTGTTAATTATGCAGCTGGATGTGAAAGCTTAATATCAAACATTGTGATGGCCATTACAGTGATGATATCACTGCAGTTTTTGACAAATCTTTTGTATTATACACCAATTGCGATAATTGCATCAGTGATCATCTCAGCTCTACCAGGACTCATAGACATAGCTGAAGCTCACAAAATTTGGAAAGTTGATAAACTTGACTTTCTTGCTTGCATTGGTGCCTTCTTTGGTGTACTATTTGCTTCTGTGGAGATTGGTCTTCTAGTAGCGGTGGCAATATCATTTACAAAGATAATTCTAATCTCAATTCGACCAAGCACAGAAACTTTAGGAAAACTTCCTGGAACTGATCTGTTCTGTGATGTTGATCAGTATCCTATGGCAATTCAGATTCCAGGGGTTATGATAATACGTATGAAATCTGCATTACTTTGCTTTGCAAATGCAAATTTCGTTAAAGAAAGGATCATCAAATGGGTCACTCAGGAAGAATCAGAAAATGACAAGGAAAATTCAAAAAGCTCCATTCAACTTGTTATTCTTGACACCTCGAATTTGGCGAACATTGACACCTCTGGAATTGCTTCTTTGGAGGAACTATACAAGTGTTTGTCTTCACATGGGAAGCAGTTGGCCATTGCAAATCCAAGATGGCAAGTGATTCACAAGCTAAAGGTTTCAAACTTTGTCAACAAAATAGGTGGCAGAGTCTATCTAACTGTTGAAGAAGCTATTGTTGGAAACAGCAAAAGTAATCAGTTCTAG 1962 0.393 MTSSTVEPCKSEDFQVDIEKNQQDVRSQWVLNAPEPPSPWHVTIDSVKKTVSNYREKVSSLCDQPCSTLFSALQVVFPILVWGRNYTAAKFRKDILAGLTIASLCIPQSIGYATLANLAPQYGLYTSVVPPLIYAVMGTSREIAIGPVAVVSLLLSSMVQKLIDPSTDPIGYTKLIFLATLFAGIFQTAFGLFRLGFLVDFLSHAAIVGFVAGAAIVIGLQQLKGLFGITHFTTKTDIISVMKAVWEAFHNPWNPHNFFLGASFLVFILTTRFVGKRKKKLFWLASISPLVSVILSTLVVFLTRADKNGVKIVKHVKGGLNPISINQLDFNSPHVVDVAKIGLIVAVVALTESVAVGRSFASIKGYQLDGNKEMMSIGFTNIIGSLTSCYVATGSFSRTAVNYAAGCESLISNIVMAITVMISLQFLTNLLYYTPIAIIASVIISALPGLIDIAEAHKIWKVDKLDFLACIGAFFGVLFASVEIGLLVAVAISFTKIILISIRPSTETLGKLPGTDLFCDVDQYPMAIQIPGVMIIRMKSALLCFANANFVKERIIKWVTQEESENDKENSKSSIQLVILDTSNLANIDTSGIASLEELYKCLSSHGKQLAIANPRWQVIHKLKVSNFVNKIGGRVYLTVEEAIVGNSKSNQF 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03409 653 SUPERFAMILY SpoIIaa-like 528 644 IPR036513 -
Trre5g03409 653 PANTHER SULFATE TRANSPORTER 56 645 IPR001902 GO:0016020|GO:0055085
Trre5g03409 653 Pfam STAS domain 524 643 IPR002645 -
Trre5g03409 653 CDD STAS_SulP_like_sulfate_transporter 524 633 - -
Trre5g03409 653 ProSiteProfiles STAS domain profile. 543 647 IPR002645 -
Trre5g03409 653 ProSitePatterns SLC26A transporters signature. 120 141 IPR018045 GO:0008271|GO:0008272
Trre5g03409 653 NCBIfam sulfate permease 78 635 IPR001902 GO:0016020|GO:0055085
Trre5g03409 653 FunFam Sulfate transporter 31 503 650 - -
Trre5g03409 653 Gene3D STAS domain 503 649 IPR036513 -
Trre5g03409 653 Pfam Sulfate permease family 91 471 IPR011547 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03409 Trre-Chr5 30823923 30832210 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03409 20 644 Inorganic Solute Cotransporters AT5G10180 67.783 0.0 877
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03409 K17469 - gmx:100817831 1071.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03409 5 30823923 30832210 Trre5g03409 5 30823923 30832210 ECH