Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03408 ATGAATCTAACAACACCATCTCTTCCATCACTAGAAGTGTTGATGGACCTTGAGAATGAGAACAATGGTAGAGAAAATAGAACACTATGGGTGCTGAATCCTCCAGAGCCACCATGCATTCTACGTCGCATCGTGGAAAATATCAAGGACAACATCTTGCATTATTCGATTCGAAACCAATTATTTTCTCTCAAACATCAATCTTCTCCAAAATTAGTATTATCCTTGTTGTTTCCTATCTTTAATTCATTCAAAAACTACAATGTTCACAAGTTCAAGTGTGATGTCTTAGCGGGTCTAATCCTCGCAATCTTTGCTATTCCGCAGGCTATGGGAAATGCGAGTTTGGCGAAGATGAGTCCAGAATATGGCCTATATACAAGTATTGTGCCACCTCTTATTTATTCTTTGATGGCAAGTTCAAGAGAGATAGTAATAGGACCTGTAACTGTGGATTCATTGCTACTTTCATCAATGATTCAAACATTGAAAGATCCTATAAATGATCCCATTGCTTATACTCAGCTTGTTTTGACTGCAACTTTTTTTACTGGTGTCTTCCAAGTTGCTTTTGGATTTCTTAGGTTTGGATTTCTGGTAGATTATCTTTCTCATGCCACAATGGTAGGGTTCTTGGCAGCAGTTGCCATAGGCATTGTACTACAACAATTGAAAGGATTATTTGGAATCACACACTTTACTAACAAAACTGATTTAGTTTCTGTGATTAAATCTCTTTGGACATCCTACAAAAACCAATCAGAATGGCATCCTTGCAATTTCATTATTGGATTCTCATTTTTGTCTTTCATCATATTTACAAGATTCCTTGGGAAAAGGAAAAAGAAATTGTTGTGGCTGTCACACATGGCTCCTCTTGTTTCATTCATTATATCAACTCTTATTGCATATAAAGTAAATGTTCATCAAATTAAACTTGAGGACTATAAAATTGAAGTCTTAGGACCAATCAAAGGAGGTAGTTTAAATCCAAGTTCACTCAACCAATTACAACTTGACGGTAACGGTAAATATTTGGGTCCTTTAATCAAAATAGCGTTGACCGTTGCTATTATTTCAACTACGGAATCTGTAGCTGTTGGCAGAATATTTGCATCACTTAGAGGTTACAATATTGATCCAAACCGAGAAGTTTTATCCTTAGGCATAATGAACATTTTTGGATCCTTCACTTCTTGTTATGTTGCATCAGGTTCAATTTCACGGACGGCTGTAAATTATAATGCCGGCTCTCAAACAACGGTGTCGAGCATAGTGATGGCACTCACAGTGTTGATGTCCCTTAAATTTTTAACAAGACTCTTATATTTCACTCCCAAGGCAATGCTAGCAGCAATAATTCTTTCAGCTGTACCAGGACTTGTTGATTTCAAAAAAGCATATGAAATTTGGAAGGTTGATAAATTAGATTTTCTTGCTTGTGCTGGAGCTTTCTTTGGAGTTTTGTTTTCATCTGTGGAAATGGGCCTTGCAATTGGGGCAGCGATATCATTTGCGAAGATAATTGTGATTTCGATTCAACCTAGCATAGCGGTTGTTGGAAGGCTGCCGGGAACGGATACATATGGTGACATAGAACAATATCCAATGGCAGTTAACATGCCTGGTGTTTTGGTGGTCTCTATTAAATTTGCTTGGCTTTGTTTCGCAAATGCAAGTCCTATTAGGGAAAAGATCGAGAAATGGGTGATCGATGAAGATGAAAATAATAAAGGAGAAAGTACTATCAAAGTCGTCATTATCGATACATCAAGTCTTGTGAGTATTGACACAGCAGGAATAACTTCTTTGGTGGAGCTGAATAAGAATCTTACTTTACATGGAGTGAAATTATCCATCGCTAATCCAAGGTGGCAAGTAATTCACAAATTAAGATTGGCTAACTTTGTGAATGAAATTGGAGGAAGGGTTTTCTTGTCTGTGGGAGAAGCTATAGATGCAATACTTAGTGCTAAAATGGCTACCGTATAA 1992 0.3715 MNLTTPSLPSLEVLMDLENENNGRENRTLWVLNPPEPPCILRRIVENIKDNILHYSIRNQLFSLKHQSSPKLVLSLLFPIFNSFKNYNVHKFKCDVLAGLILAIFAIPQAMGNASLAKMSPEYGLYTSIVPPLIYSLMASSREIVIGPVTVDSLLLSSMIQTLKDPINDPIAYTQLVLTATFFTGVFQVAFGFLRFGFLVDYLSHATMVGFLAAVAIGIVLQQLKGLFGITHFTNKTDLVSVIKSLWTSYKNQSEWHPCNFIIGFSFLSFIIFTRFLGKRKKKLLWLSHMAPLVSFIISTLIAYKVNVHQIKLEDYKIEVLGPIKGGSLNPSSLNQLQLDGNGKYLGPLIKIALTVAIISTTESVAVGRIFASLRGYNIDPNREVLSLGIMNIFGSFTSCYVASGSISRTAVNYNAGSQTTVSSIVMALTVLMSLKFLTRLLYFTPKAMLAAIILSAVPGLVDFKKAYEIWKVDKLDFLACAGAFFGVLFSSVEMGLAIGAAISFAKIIVISIQPSIAVVGRLPGTDTYGDIEQYPMAVNMPGVLVVSIKFAWLCFANASPIREKIEKWVIDEDENNKGESTIKVVIIDTSSLVSIDTAGITSLVELNKNLTLHGVKLSIANPRWQVIHKLRLANFVNEIGGRVFLSVGEAIDAILSAKMATV 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03408 663 Pfam Sulfate permease family 92 482 IPR011547 GO:0016020
Trre5g03408 663 NCBIfam sulfate permease 79 647 IPR001902 GO:0016020|GO:0055085
Trre5g03408 663 ProSiteProfiles STAS domain profile. 554 655 IPR002645 -
Trre5g03408 663 Gene3D STAS domain 514 658 IPR036513 -
Trre5g03408 663 ProSitePatterns SLC26A transporters signature. 121 142 IPR018045 GO:0008271|GO:0008272
Trre5g03408 663 Pfam STAS domain 535 651 IPR002645 -
Trre5g03408 663 CDD STAS_SulP_like_sulfate_transporter 535 646 - -
Trre5g03408 663 SUPERFAMILY SpoIIaa-like 542 655 IPR036513 -
Trre5g03408 663 PANTHER SULFATE TRANSPORTER 68 656 IPR001902 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03408 Trre-Chr5 30816462 30820454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03408 24 660 Inorganic Solute Cotransporters AT5G10180 53.571 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03408 K17469 - gmx:100817841 876.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03408 5 30816462 30820454 Trre5g03408 5 30816462 30820454 ECH