Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03407 ATGACTCGCGTCTATATTGGAAATCTTGATTCACGAATTTCTGAAAGGGATCTTGAAGATGATTTTCATGTTTTTGGAGTTATACGAAGTGTTTGGGTTGCAAGGAGGCCACCTGGTTATGCTTTCATTGATTTTGATGACCGCAGAGATGCGCTCGATGCTATTCGTGAATTAGATGTACCTCAAACTGAAGATGTGAGAAAGATCTAG 210 0.4 MTRVYIGNLDSRISERDLEDDFHVFGVIRSVWVARRPPGYAFIDFDDRRDALDAIRELDVPQTEDVRKI 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03407 69 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 69 IPR000504 GO:0003723
Trre5g03407 69 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 64 - -
Trre5g03407 69 Gene3D - 2 68 IPR012677 -
Trre5g03407 69 FunFam Splicing factor, arginine/serine-rich 7 1 67 - -
Trre5g03407 69 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 59 IPR000504 GO:0003723
Trre5g03407 69 SMART rrm1_1 3 67 IPR000504 GO:0003723
Trre5g03407 69 SUPERFAMILY RNA-binding domain, RBD 2 59 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03407 Trre-Chr5 30796956 30797889 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03407 2 59 Eukaryotic Initiation Factors Gene Family AT4G34110 34.921 3.27e-07 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03407 K12896 - mtr:112419871 123.635