Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03401 ATGTTCATGGCTATAGATAAATATGTTGTTTATGATTTGGAAGGTGGCCACAAGTTGGCTGTTGGATTCAGGTTTGATCCAATAGATGACATTCTTGTGAACTTTTACCTCAAGTTGAAGGTTCATAATCAATCTCTTCCACTTCATGGTATTCAAGAATTTGATGTCTTTCAAACTGAACCTTGGATGCTTCCATACGATAGGAATTCTTTCAAAGATAAGAAATATTATTTCTTTGATATTAGGAACCGTAGGTTCCTTAACATGGATACGAGAGTCGCTGGAAATGGCGAATGGAGAACGGTAGAAAAGAACAAGCAATTTGCTCTCCCAAGCAACTACTTCATTGGTAGAAAGAACACCCTTGTATATTGGAGAATACAAGGAAATGAAGTTGTTAAGACACAATGGATGATGCATGAATTTCGCATTAGTACAATTTTTCATCCAATAAAGGTGACAATTTTAGGTGCTTATCGCATTTTTAAGATGAAGGTTGCAAAGGTAGAGAAGGTGAACACACCAACTGTGATTGAGTTTACAATGGAGGATGCAAATTCATCCGCCCCTCCTCCTTCTCCATGA 585 0.3744 MFMAIDKYVVYDLEGGHKLAVGFRFDPIDDILVNFYLKLKVHNQSLPLHGIQEFDVFQTEPWMLPYDRNSFKDKKYYFFDIRNRRFLNMDTRVAGNGEWRTVEKNKQFALPSNYFIGRKNTLVYWRIQGNEVVKTQWMMHEFRISTIFHPIKVTILGAYRIFKMKVAKVEKVNTPTVIEFTMEDANSSAPPPSP 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03401 194 Gene3D NAC domain 29 169 IPR036093 GO:0003677|GO:0006355
Trre5g03401 194 SUPERFAMILY NAC domain 16 148 IPR036093 GO:0003677|GO:0006355
Trre5g03401 194 ProSiteProfiles NAC domain profile. 19 164 IPR003441 GO:0003677|GO:0006355
Trre5g03401 194 Pfam No apical meristem (NAM) protein 21 144 IPR003441 GO:0003677|GO:0006355
Trre5g03401 194 PANTHER NAC TRANSCRIPTION FACTOR 56 19 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03401 Trre-Chr5 30596391 30597318 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03401 22 147 NAC Transcription Factor Family AT5G39820 40.310 5.95e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre5g03401 NAM 5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03401 - - cam:101501671 242.276