Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03400 ATGGCTATAGATAAATATGTTGTTTATGATTTGGAAGGTGGCCACAAGTTGGCTGTTGGATTCAGGTTTGATCCAACAGATGACATTCTTGTGAACTTTTACCTCAAGTTGAAGGTTCATAATCAATCTCTTCCACTTCATGGTATTCAAGAATTTGATGTCTTTCAAACTGAACCTTGGATGCTTCCATACGATAGGAATTCTTTCAAAGATAAGAAATATTATTTCTTTGATATTAGGAACCGTAGGTTCCTAAACATGGATACGAGAGTCGCTGGAAATGGCGAATGGAGAACGGTAGAAAAGAACAAGCAATTTGCTTTCCCAAGCAACTACTTCATTGGTAGAAAGAACACCCTTGTATATTGGAGAATACAAGGAAATGAAGTTGTTAAGACACAATGGATGATGCATGAATTTCGCATTAGTACAATTTTTCATCCAATAAAGGTGACAACTTTAGGTGCTTATCGCATTTTTAAGATGAAGGTTGCAAAGGTAGAGAAGAAGGTGAACACACCAACTGTGATTGAGTTTACAATGGAGGATGCAAATTCATCTGCCCCTCCTCCTTCTCCATGA 582 0.3746 MAIDKYVVYDLEGGHKLAVGFRFDPTDDILVNFYLKLKVHNQSLPLHGIQEFDVFQTEPWMLPYDRNSFKDKKYYFFDIRNRRFLNMDTRVAGNGEWRTVEKNKQFAFPSNYFIGRKNTLVYWRIQGNEVVKTQWMMHEFRISTIFHPIKVTTLGAYRIFKMKVAKVEKKVNTPTVIEFTMEDANSSAPPPSP 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03400 193 PANTHER NAC TRANSCRIPTION FACTOR 56 17 163 - -
Trre5g03400 193 Gene3D NAC domain 26 171 IPR036093 GO:0003677|GO:0006355
Trre5g03400 193 ProSiteProfiles NAC domain profile. 17 162 IPR003441 GO:0003677|GO:0006355
Trre5g03400 193 Pfam No apical meristem (NAM) protein 19 142 IPR003441 GO:0003677|GO:0006355
Trre5g03400 193 SUPERFAMILY NAC domain 14 147 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03400 Trre-Chr5 30560726 30561648 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03400 20 145 NAC Transcription Factor Family AT5G39820 40.310 3.52e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre5g03400 NAM 3.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03400 - - cam:101501671 244.202