Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03399 ATGTTCATGGCTATAGATAAATATGTTGTTTATGATTTGGAAGGTGGCCACAAGTTGGCTGTTGGATTCAGGTTTGATCCAACAGATGACATTCTTGTGAACTTTTACCTCAAGTTGAAGGTTCATAATCAATCTCTTCCACTTCATGGTATTCAAGAATTTGATGTCTTTCAAACTGAACCTTGGATGCTTCCATACGATAGGAATTCTTTCAAAGATAAGAAATATTATTTCTTTGATATTAGGAACCGTAGGTTCCTAAACATGGATACGAGAGTCGCTGGAAATGGCGAATGGAGAACGGTAGAAAAGAACAAGCAATTTGCTTTCCCAAGCAACTACTTCATTGGTAGAAAGAACACCCTTGTATATTGGAGAATACAAGGAAATGAAGTTGTTAAGACACAATGGATGATGCATGAATTTCGCATTAGTACAATTTTTCATCCAATAAAGGTGACAACTTTAGGTGCTTATCGCATTTTTAAGATGAAGGTTGCAAAGGTAGAGAAGAAGGTGAACACACCAACTGTGATTGAGTTTACAATGGAGGATGCAAATTCATCTGCCCCTCCTCCTTCTCCATGA 588 0.3741 MFMAIDKYVVYDLEGGHKLAVGFRFDPTDDILVNFYLKLKVHNQSLPLHGIQEFDVFQTEPWMLPYDRNSFKDKKYYFFDIRNRRFLNMDTRVAGNGEWRTVEKNKQFAFPSNYFIGRKNTLVYWRIQGNEVVKTQWMMHEFRISTIFHPIKVTTLGAYRIFKMKVAKVEKKVNTPTVIEFTMEDANSSAPPPSP 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03399 195 ProSiteProfiles NAC domain profile. 19 164 IPR003441 GO:0003677|GO:0006355
Trre5g03399 195 SUPERFAMILY NAC domain 16 149 IPR036093 GO:0003677|GO:0006355
Trre5g03399 195 Gene3D NAC domain 28 173 IPR036093 GO:0003677|GO:0006355
Trre5g03399 195 PANTHER NAC TRANSCRIPTION FACTOR 56 19 165 - -
Trre5g03399 195 Pfam No apical meristem (NAM) protein 21 144 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03399 Trre-Chr5 30560720 30561648 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03399 22 147 NAC Transcription Factor Family AT5G39820 40.310 4.45e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre5g03399 NAM 3.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03399 - - cam:101501671 244.202