Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03359 ATGTCTCGCAACTCTCAAACATTCAACCATGGAAAAGAACACAGCATTACAATATTTGGTGTTCGACTAACTAGAACTAATGACGATGACAACAACAACAACATCCAACTCTCTGAATACCAACAACCTCTGCCTCAAGTTTCCACCTCCACTGGTGCCAGTTATGTCTCCGACAATATCGTTCATGTCCTGGACCGGTCCCGCAAATGCAAACGAGGTGTTCCTTGGACGGAAGAAGAACAAAAATTGTTCTTGAAAGGGTTGAAAGAGAGTGGTAAGGGTAAATGGAAAAGAATTTCTACCGACTTTGTTAAAACTCGGACAGCAACTCAGGTTGCAAGTCACGCGCAAAAGCATTTTCTCTATCGTCCTAACCCGAACCGCCGCCGCAGGAAACCTAGTGTCTTTGATCTTACCAATGATAAGGTGATAGAATCTTCAACAATTGTGGAAAATGAGCAGATTCGGCAAGAAAATGTGGTGCCCCTACCTCCACCAACCCCCACCCCATATCCATCCACACACAATGGCGGATTTCCCGACGGCCCTTTACCGATCAATCTTGGTCCGGTAGCATTACCGGTGTGGCCTCTTTCTTGGTTCGACTTGAATGGCAAAGGATCTTCTTCTTCTTCCACTAAGACTTTTTCATTGTCATTGAAGCTATAA 669 0.4484 MSRNSQTFNHGKEHSITIFGVRLTRTNDDDNNNNIQLSEYQQPLPQVSTSTGASYVSDNIVHVLDRSRKCKRGVPWTEEEQKLFLKGLKESGKGKWKRISTDFVKTRTATQVASHAQKHFLYRPNPNRRRRKPSVFDLTNDKVIESSTIVENEQIRQENVVPLPPPTPTPYPSTHNGGFPDGPLPINLGPVALPVWPLSWFDLNGKGSSSSSTKTFSLSLKL 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03359 222 Gene3D - 76 122 - -
Trre5g03359 222 NCBIfam myb-like DNA-binding domain, SHAQKYF class 71 121 IPR006447 GO:0003677
Trre5g03359 222 Pfam Myb-like DNA-binding domain 75 119 IPR001005 -
Trre5g03359 222 SMART sant 72 122 IPR001005 -
Trre5g03359 222 ProSiteProfiles Myb-like domain profile. 75 120 IPR001005 -
Trre5g03359 222 PANTHER TRANSCRIPTION FACTOR KUA1 3 159 - -
Trre5g03359 222 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 124 IPR017930 -
Trre5g03359 222 CDD SANT 75 120 IPR001005 -
Trre5g03359 222 SUPERFAMILY Homeodomain-like 70 123 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03359 Trre-Chr5 30184899 30186612 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre5g03359 Myb_DNA-binding 1.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03359 - - tpra:123909419 201.83