Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03357 ATGGATAGTGCTTTTGATATGGTTGGTTCTGTTAGTCCTGGTAGAGAGTCATGGCGCTTCAAGGTTCGTGTGCTTCGTGTATGGAAGTTGTTCTCTTTTTTGAAACCTGATATGGTGAATTCGCTTGAGATGGTTCTAATTGATGAGAAGGGTGCGAAAATTCATGCTTCCGTTCGCCGGCAGTTGCTGTATTTGTTCCGTGATAAAATCTCTGAGGGAAAGGTTTATAAGATGTCACATTTCACGGTTGCACCAGAATCCGATCAATATGGACTGTCATTGACCACAATTGGAGGTGTTTGTAGTTATGGACCTGGTCATGATTTCTTAGTTGATGTTGCTGCTTTGGTTACTTCCATTTCTCCTGAGAAGGAGTATATGCATGATGGAAAGCTTACCAAAATGGTTGTCCTTCAGCTTATTGATAACAGTGGGCATTGTGAGTGTGCATTATTTGGATCATACGTTGATGAACTTCAAGGTTTGCTTGCAAATGCTGGTGGTAGTTTGCCTGTGCTTGTGATTCAGTTTGCTAAAATTAAGAGTTTTCGTGGGAATGTTTCTATTCAAAATGTCTTGAATGCTACTAGGATTTATATTAATCCTTCAATGCCAGAGGCTGTTGCTTTCAAGGAAGGCCTTTCTATTGTTGGTATTGTTCTTTCTACTGCGCTCCCCACTGTTAGTACTAATGCTAGGCCAACTCTTGAGGATGACTTTTTGTTGAAATATCCAAAAACTTCCATAGCTGATTTGCTTGAAATAAACAAAGATGGTATCTATATTGTTGGTGGTATCGTTGATGGGTTGGTGGATCCTGAAGATTGGTGGTATGCTGCGTGTAGTTGTCATAGGAGTGTTTCTGCTGATTCTGGTGCATACTATTGCCATCATTGTGTCAAACATGTTTTCAAAATGGTTCCAAGGTTTAGGGTGAAGGTAAGAGTTTCTGATGGATCTGGCCAAGCTGTATTTGTTGTTTTTGATGGTGATATGAATGCTTTATTGGGGAAGCATTGCCATGAGTTGGTTTCTGTACCTAAGTCACAGAATGCTGGATATTATCCTCCAGAATTGGATTTGTTGAAAGGGATGAAATTGTTGTTCAAGGTTGACAAAAGTCCTAGGATTGGTTCTATTCTGTTTGATGGTTCATTTAGAGTGAAGAGGATATGCACTGATTTGTCTATTATTGATGCTTTTGATTCAGATTTTCTAAATGAGAATTCTGATTCTGATGATGGTGATGGAGATGATGATGAAAGTGAAGATGATGAAACTGTTGAGGGTACTCAGATTGAAGATTTAGTTGGTCCTGCTGTTGCTTCACCTTCCTCTGTTATAGTTGCAGAAGATGATGATTCAAGTGGTCTTATAACACCCCCCCCTATCAATTTGGCTGATAATTCTGACAAGGATTTAGAAGTTTTCGCTTCTGGAGTAGGTGATTGGAATGGTGATAAAATTTCATCTGCTAAGCGTAATCTATTTGCTGCATTTACCGAATCTGTTGATGCTGGAACAATTTCTAACAAGATTACCAAGAATTCTTCTGAATTTGATGACCCTGGATCAGTTTCTAGCAGGAGCATCAACAAGTGTGCTGAAATTGATGATGATGGATCAGTTCCTCCCAGTGATGGTGCTAAGCAGTCCAAGGGGTGA 1665 0.397 MDSAFDMVGSVSPGRESWRFKVRVLRVWKLFSFLKPDMVNSLEMVLIDEKGAKIHASVRRQLLYLFRDKISEGKVYKMSHFTVAPESDQYGLSLTTIGGVCSYGPGHDFLVDVAALVTSISPEKEYMHDGKLTKMVVLQLIDNSGHCECALFGSYVDELQGLLANAGGSLPVLVIQFAKIKSFRGNVSIQNVLNATRIYINPSMPEAVAFKEGLSIVGIVLSTALPTVSTNARPTLEDDFLLKYPKTSIADLLEINKDGIYIVGGIVDGLVDPEDWWYAACSCHRSVSADSGAYYCHHCVKHVFKMVPRFRVKVRVSDGSGQAVFVVFDGDMNALLGKHCHELVSVPKSQNAGYYPPELDLLKGMKLLFKVDKSPRIGSILFDGSFRVKRICTDLSIIDAFDSDFLNENSDSDDGDGDDDESEDDETVEGTQIEDLVGPAVASPSSVIVAEDDDSSGLITPPPINLADNSDKDLEVFASGVGDWNGDKISSAKRNLFAAFTESVDAGTISNKITKNSSEFDDPGSVSSRSINKCAEIDDDGSVPPSDGAKQSKG 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03357 554 Pfam Replication factor-A C terminal domain 271 352 IPR013955 -
Trre5g03357 554 CDD RPA1_DBD_C 249 371 IPR047192 -
Trre5g03357 554 CDD RPA1_DBD_B_like 112 211 - -
Trre5g03357 554 PANTHER OS03G0429900 PROTEIN 7 372 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre5g03357 554 Gene3D - 95 216 IPR012340 -
Trre5g03357 554 Pfam Domain of unknown function DUF223 43 90 IPR003871 -
Trre5g03357 554 CDD RPA1_DBD_A_like 21 90 - -
Trre5g03357 554 SUPERFAMILY Nucleic acid-binding proteins 254 372 IPR012340 -
Trre5g03357 554 MobiDBLite consensus disorder prediction 407 432 - -
Trre5g03357 554 Gene3D - 244 396 IPR012340 -
Trre5g03357 554 MobiDBLite consensus disorder prediction 513 532 - -
Trre5g03357 554 SUPERFAMILY Nucleic acid-binding proteins 93 219 IPR012340 -
Trre5g03357 554 MobiDBLite consensus disorder prediction 407 431 - -
Trre5g03357 554 MobiDBLite consensus disorder prediction 513 554 - -
Trre5g03357 554 SUPERFAMILY Nucleic acid-binding proteins 5 91 IPR012340 -
Trre5g03357 554 Gene3D - 5 94 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03357 Trre-Chr5 30161875 30164482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03357 10 337 Core DNA Replication Machinery Family AT5G08020 23.592 4.91e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03357 - - tpra:123893724 566.614