Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03345 ATGTCTAATACCAACCCAAATTCATATCATCCGACCCGGTTATTTCACCCGCACCAAGATCCAAATACCAACACCGCCGACCCTCACGTTCCGCTTCGGAACCTATCCTTGGTTCGGACCAGAATCGATTCTCTACGAACCTTCCTATCTCAATCCATCGACAACAACTCTCCTCTCACCAACGATCAAACAACCGTCGTCTCCAACCAGATCGTCTCCGCCATCCACAACACCATAGTCAACGCCGCCGCTCTCGTTTCTTACTCTCAAAATCTCACCGTTCCTGGAGCCTCAATCTTCCCACAGAAGAATCTCATACCAGAACCCTCCGCCGTAGATATCGCCAAGCAACATAAGCTCGATCCAAAAATCGAACCAACTAAAGACGACGGCGACGACTTCCTCATCGACGACGATTGCGAAATCGTGGAACTCGACGCCGTCGAATTGCTAGCGGAACATCTCCATTTCTGCGAGATTTGCGGCAAAGGATTCAAACGCGATGCGAATCTCCGGATGCATATGAGAGCACACGGTAACAAATTCAAGACGCCAGAAGCGTTAGCGAAGCCTGTAGACGACGGAACACGACGTCGTTCAACGCGATTCTCTTGTCCTTTTGAAGGATGTAACAGAAACAAGAAGCATAAGAAATTCAAAGCTTTGAAATCGGTTATTTGTGTTAAGAATCATTTCAAGAGAAGTCATTGTCCGAAAATGTATTCGTGTAACCGTTGTAATAAGAAGAAATATTCGGTGGTTTCGGATTTGAAGAGTCATATGAGACAGTGTGGTGATGAGTGTAAGTGGAAGTGTTGTTGTGGGACAACGTTTTCTAGGAAGGATAAGTTGTTTGGACATGTTGCTTTGTTTGAGGGTCATATGCCTGCAGTTGGTTTGGAAGAATGTGAGGACAAAGGGAAACAAGTTCTTGTGGAGGAGAGTGAAGAGAAAGAGAAAAGTGATTTTGGCTGTAGCCACTAG 984 0.4593 MSNTNPNSYHPTRLFHPHQDPNTNTADPHVPLRNLSLVRTRIDSLRTFLSQSIDNNSPLTNDQTTVVSNQIVSAIHNTIVNAAALVSYSQNLTVPGASIFPQKNLIPEPSAVDIAKQHKLDPKIEPTKDDGDDFLIDDDCEIVELDAVELLAEHLHFCEICGKGFKRDANLRMHMRAHGNKFKTPEALAKPVDDGTRRRSTRFSCPFEGCNRNKKHKKFKALKSVICVKNHFKRSHCPKMYSCNRCNKKKYSVVSDLKSHMRQCGDECKWKCCCGTTFSRKDKLFGHVALFEGHMPAVGLEECEDKGKQVLVEESEEKEKSDFGCSH 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03345 327 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 127 317 IPR044300 GO:0010044|GO:0010447
Trre5g03345 327 Gene3D Classic Zinc Finger 156 179 - -
Trre5g03345 327 ProSitePatterns Zinc finger C2H2 type domain signature. 158 178 IPR013087 -
Trre5g03345 327 FunFam Zinc finger 45-like 153 179 - -
Trre5g03345 327 SUPERFAMILY beta-beta-alpha zinc fingers 152 179 IPR036236 -
Trre5g03345 327 SMART c2h2final6 156 178 IPR013087 -
Trre5g03345 327 SMART c2h2final6 241 262 IPR013087 -
Trre5g03345 327 SMART c2h2final6 203 236 IPR013087 -
Trre5g03345 327 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 183 IPR013087 -
Trre5g03345 327 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03345 Trre-Chr5 30078225 30079758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03345 141 302 C2H2 Transcription Factor Family AT1G34370 62.048 3.06e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre5g03345 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03345 - - cam:101491258 501.901