Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03342 ATGGCATCTTCTTCAATAGCTACCAACATAACTACTTCAACTCCTGGAATCGTAACTCATTATGTGCAAAATCGTGGTGGTTTCTTAACAGCCCACATCATTGGACAGCCATATGGTGAAATGAGTCCAAAGTTTATTCAAGAAATATATCTAGAACTTCCACAAATTATAACTGTGTTTGATAGCAATAATAGAAGTATACCGGTTCAGTTTAATGGGTCTCTTCAGCATCCTATGATTGTTGCTGGATGGAGGCGAATGAGGAAGTTCTTCGGTATCAATGGAAACCAAATGATCCTATTGACCTATTTCGGAGAGGCGTGTTTTCTATTGCATATTTTGGATCAAGAATTTCATCCTAACCGTTTGCCTTCTTGGCATTCTTATCGTACCTACAATACTGATCTCACATCATTTGATGTTGATCTTACTCCTTATCTGGTATCAGGATCTCAGTTGACTTTGAAAAAAGATTTCGCAACCTACATTCACAATTGTCCCTACAATGAATTATTGCTATATGGTCCAAGTGGAGATGAATTTTCCTGCTCCATTTTTCGCAGAAATAACTCAACCAAAGTAGGAAAAGGATGGAAGAATTTTGTTGCCAACAATGCCTTTGTGAGTGGTGACAAGTTGAACTTCAAGTTTGTGGACAAGGAATCAAATAATGTTATGAAAGTTATCATCTTCAACACTTAA 702 0.3704 MASSSIATNITTSTPGIVTHYVQNRGGFLTAHIIGQPYGEMSPKFIQEIYLELPQIITVFDSNNRSIPVQFNGSLQHPMIVAGWRRMRKFFGINGNQMILLTYFGEACFLLHILDQEFHPNRLPSWHSYRTYNTDLTSFDVDLTPYLVSGSQLTLKKDFATYIHNCPYNELLLYGPSGDEFSCSIFRRNNSTKVGKGWKNFVANNAFVSGDKLNFKFVDKESNNVMKVIIFNT 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03342 233 SUPERFAMILY DNA-binding pseudobarrel domain 132 232 IPR015300 -
Trre5g03342 233 SMART B3_2 139 233 IPR003340 GO:0003677
Trre5g03342 233 Gene3D - 125 233 IPR015300 -
Trre5g03342 233 ProSiteProfiles B3 DNA-binding domain profile. 138 233 IPR003340 GO:0003677
Trre5g03342 233 SUPERFAMILY DNA-binding pseudobarrel domain 41 115 IPR015300 -
Trre5g03342 233 CDD B3_DNA 143 232 IPR003340 GO:0003677
Trre5g03342 233 Pfam B3 DNA binding domain 142 231 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03342 Trre-Chr5 29995325 29996539 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre5g03342 B3 1e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03342 - - tpra:123900141 251.521