Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03341 ATGGTTGAGGAAGAATTCGACGTCCCTATAATTGCCACACCACCACCGCCGGAACCTTCCCTCACTGCCACTCGCTCGTTGCCTCTCACCGTCGACTACCATCATCAGGAATCGTTTGACATCTCTCGTGGCCGAGGACATGGAGGTGGTGATGTTGAATTGGGAGAATACGGAAGGAATTCAGGAGAGCTTAGCTTGGATACTTTCTTCAAAAAGGTTCAAGAGCTTGAGAAACAATATGCTAAGCTAGATAACCTTTTGAGGAAACTTCAGGATGCTCATGAGGAGTCCAAAGCTGTTAGCAAAGCTCCTACCATGAAGGCGATAAGGCAGAGAATGGATAAAGATGTCGATGAAGTTAAGAAAACTGCACATTACTTAAAGACTAAAGTTGAAGAGCTCGACAAAGAGAATTTGGCTAATAGACAGAATCCTGGTTGCGGAACAGGATCAGTTGTAGACCGGTCTAGAACAGCAACAACAATTAACTTGAAAAAGAAACTGAAGAACAAGATGGCTGAATTTCAGACCCTGAGAACAGCCATCCATGAAGAATATCGTGACGTTGTTGAGAGACGTGTATTTACAGTAATGGGCAAAAGAGCTGATGAAAAGACAATTGACAGATTAATTGAGATTGTCACTGCTTTTTAG 654 0.4312 MVEEEFDVPIIATPPPPEPSLTATRSLPLTVDYHHQESFDISRGRGHGGGDVELGEYGRNSGELSLDTFFKKVQELEKQYAKLDNLLRKLQDAHEESKAVSKAPTMKAIRQRMDKDVDEVKKTAHYLKTKVEELDKENLANRQNPGCGTGSVVDRSRTATTINLKKKLKNKMAEFQTLRTAIHEEYRDVVERRVFTVMGKRADEKTIDRLIEIVTAF 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03341 217 MobiDBLite consensus disorder prediction 1 21 - -
Trre5g03341 217 SUPERFAMILY t-snare proteins 66 212 IPR010989 GO:0016020|GO:0016192
Trre5g03341 217 Pfam Syntaxin 69 212 IPR006011 GO:0016020
Trre5g03341 217 Coils Coil 117 137 - -
Trre5g03341 217 SMART SynN_4 61 187 IPR006011 GO:0016020
Trre5g03341 217 Coils Coil 66 103 - -
Trre5g03341 217 CDD SynN 66 212 IPR006011 GO:0016020
Trre5g03341 217 PANTHER SYNTAXIN 69 201 IPR045242 -
Trre5g03341 217 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 63 193 - -
Trre5g03341 217 Gene3D - 63 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03341 Trre-Chr5 29991732 29995283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03341 38 212 SNARE and Associated Proteins AT3G03800 63.429 7.01e-74 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03341 K08486 - gmx:100306329 291.967