Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03331 ATGTTAGTCATAAATTCATCACACAGTTCTTTGCAAGGGAATAACATCAGTGGTGCCATACCAAAAGAATTTGGAAATCTTACAAGCTTGGTGAGATTGGATCTGGATCACAACATATTAACCGGTGAAATACCATCTTCTCTTGGTAATCTTAAAAAGCTTCAATTCTTGACATTAAGTCAAAACAATCTCAACGGTACTATTCCAGAATCACTTGGCAGTCTTCCAAACTTGAGCAATATTCTGCTAGACTCAAATGATCTCAGCGGACGTATTCCAGAACAGTTATTCAATGTTCCTAAGTACAATTTCACTGGAAATAAGTTGGATTGTGGTGTAAGTTATCTGCATCTTTGCACATCTGATAATGCAAATCAAGGTTCATCACACAAATCAAAAGTAGGTCTCATAGTTGGAACAGTTGTAGGTTTAATTATTATTCTTTTTCTTGGCGGCCTTCTGTTTTTCTGGTGCAAACGGTACAAGCGTGAAGTTTTTGTAGATGTTGCAGGCGAAGTTGATCGGCGAATTACATTGGGTCAAATAAAAAGTTTTTCCTGGAGAGAATTACAGATAGCTACAGACAACTTCAGCGAGAGAAATGTTTTAGGACAAGGAGGCTTTGGAAAGGTTTATAAAGGTGTTCTAGCTGATGGGACAAAAATTGCTGTCAAAAGGCTAACTGATTATGAAAGTCCTGGTGGTGATCAAGCTTTCCAGCGTGAAGTTGAGATGATAAGCGTTGCTGTCCATAGGAACCTTTTACGGCTCATTGGGTTTTGTACTACTCCAACTGAACGCCTCTTAGTTTATCCCTTCATGCAGAACTTAAGTGTTGCCTCTCGACTACGAGAAATCAAACCTGGGGAATCTGTTTTGGATTGGGCTACAAGAAAACGAGTGGCTCTTGGAACAGCTCGTGGCCTTGAATATCTTCACGAGCAATGTGATCCCAAAATTATTCATAGAGATGTAAAGGCAGCTAATATATTACTAGATGGAGATTTTGAAGCAGTTGTCGGTGACTTTGGTTTGGCAAAATTGGTTGATGTTCGAAGGACTAATGTGACGACTCAAATTCGTGGGACAATGGGACATATAGCTCCCGAATACTTGTCTACCGGAAAATCTTCAGAAAAGACAGATGTTTTTAGTTATGGGATTATGCTTTTGGAGCTTGTTACAGGTCAACGTGCAATTGACTTTTCACGTTTGGAAGATCAAGATGATGTGTTACTGCTTGACCATGCAAAGAAGCTACAACGGGAGAAAAGACTGGATGCTATTGTTGACCGCAATCTCGATAAAAATTACAACATAGAAGAAGTTGAAGTGATAGTACAAGTTGCATTACTGTGCACACAAGCAACGCCAGAGGATCGTCCGGCAATGTCAGAGGTTGTAAGAATGTTGGAGGGAGAGGGGCTAACCGAAAGGTGGGAAGAATGGAGGCATGTGGAGGTTACTCGGATGCAAGACTCCGAGAGACTGCAAAGAAGATTTGCATGGGGAGATGATTCAATTCATAACCAAGATGCCATTGAGTTATCGGGTGGAAGATGA 1563 0.4056 MLVINSSHSSLQGNNISGAIPKEFGNLTSLVRLDLDHNILTGEIPSSLGNLKKLQFLTLSQNNLNGTIPESLGSLPNLSNILLDSNDLSGRIPEQLFNVPKYNFTGNKLDCGVSYLHLCTSDNANQGSSHKSKVGLIVGTVVGLIIILFLGGLLFFWCKRYKREVFVDVAGEVDRRITLGQIKSFSWRELQIATDNFSERNVLGQGGFGKVYKGVLADGTKIAVKRLTDYESPGGDQAFQREVEMISVAVHRNLLRLIGFCTTPTERLLVYPFMQNLSVASRLREIKPGESVLDWATRKRVALGTARGLEYLHEQCDPKIIHRDVKAANILLDGDFEAVVGDFGLAKLVDVRRTNVTTQIRGTMGHIAPEYLSTGKSSEKTDVFSYGIMLLELVTGQRAIDFSRLEDQDDVLLLDHAKKLQREKRLDAIVDRNLDKNYNIEEVEVIVQVALLCTQATPEDRPAMSEVVRMLEGEGLTERWEEWRHVEVTRMQDSERLQRRFAWGDDSIHNQDAIELSGGR 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03331 520 Gene3D Transferase(Phosphotransferase) domain 1 274 491 - -
Trre5g03331 520 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 3 119 - -
Trre5g03331 520 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 365 500 - -
Trre5g03331 520 FunFam Somatic embryogenesis receptor kinase 1 166 273 - -
Trre5g03331 520 ProSiteProfiles Protein kinase domain profile. 197 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g03331 520 ProSitePatterns Serine/Threonine protein kinases active-site signature. 320 332 IPR008271 GO:0004672|GO:0006468
Trre5g03331 520 FunFam Somatic embryogenesis receptor-like kinase 1 274 491 - -
Trre5g03331 520 Pfam Protein kinase domain 198 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g03331 520 Gene3D Phosphorylase Kinase; domain 1 166 273 - -
Trre5g03331 520 Gene3D Ribonuclease Inhibitor 3 123 IPR032675 -
Trre5g03331 520 ProSitePatterns Protein kinases ATP-binding region signature. 203 225 IPR017441 GO:0005524
Trre5g03331 520 Pfam Leucine rich repeat 30 88 IPR001611 GO:0005515
Trre5g03331 520 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 482 - -
Trre5g03331 520 SMART serkin_6 197 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g03331 520 SUPERFAMILY Protein kinase-like (PK-like) 176 472 IPR011009 -
Trre5g03331 520 SUPERFAMILY L domain-like 10 107 - -
Trre5g03331 520 CDD TM_EGFR-like 132 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03331 Trre-Chr5 29896372 29899228 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03331 10 520 Receptor kinase-like Gene Family AT5G10290 77.087 0.0 777
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Trre5g03331 Pkinase 7.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03331 - - gmx:100786654 850.506