Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03328 ATGGCTGTTACACCTTTTGGTAATACATCAGCTACTCAATGGGGAATTCGTCCTCAGATTATTGCCAGATCCAGTACAATAGCCAAATTCGCTTCGTCACGTGATAATGTTACAAGCAGAGTAAATTTTATGGCTTCCCCAAGTTCAACCTTTTTTGCTCGGGATTCCTTGCGTTTTAACACCGGTTCATATCAAACTTTGCATCGTCGAAGGGGATCAAGGTTTATAGTTAGAGCTGGCACAGATTTCTACACTGTCCTTGGGGTGTCAAAAAATTCTACTAAATCTGAAATTAAGACTGCGTATCGGAAGCTAGCCCGGAATTATCATCCAGATGTGAACAAGGAACCTGGTGCCGAAGAGAAATTTAAGGAAATTAGTAATGCATATGAGGTCTTATCAGACGATGAGAAACGATCCATATATGACAAATATGGGGAGGCAGGGCTTAAAGGTCAAGGAATGGGCATGGGGGATTTCAGCAATCCTTTTGATTTGTTTGAGACACTATTTGAGGGCATGGGCGGTGGAATGGGCAGCAGAGGCTCTTGGAATGGAGCAGTTGATGGTGAAGATGAGTATTACAGTCTTGTTTTGAACTTTAAAGAAGCCGTTTTCGGAGTGGAAAAGGAGATAGAGATTAAGCGACTAGAGAATTGTGGAACCTGCGATGGTTCAGGGGCTAAACCAGGGACTAAATCATCCAGATGTAACACTTGCGGTGGTCAGGGTCGGGTTGTAACACAAACAAGGACTCCGTTAGGTATCTTTCAGCAGTCTATGACTTGCTCGTCTTGCAATGGGACCGGAGAAACTCGAACACCTTGCAGTACATGTTCTGGGGATGGTCGGGTGAGGAAATCAAAGCGGATAAGTCTCAAGGTTCCAGCCGGTGTGGATTCTGGTAGTCGTTTAAGGGTCCGAAATGAAGGTAACACCGGAAGGCGTGGTGGTGCTCCTGGTGACCTCTTTGTTATTCTTGAAGTTATCCCGGATCCCGTGCTTAAACGTGAAGACACAAACATTTTATACTCTTGTAAAGTTTCCTATATCGATGCAATCTTGGGGACTACAATTAAGGTTCCAACTGTTGATGGAATGGTGGATTTAAAAATCCCATCCGGCACACAACCAGGATCAACACTTGTTATGGCTAAGAAAGGTGTTCCACTGCTGAATAAAAAGAATATGAGGGGTGATCAAATGGTTCGGGTGCAAGTTGAGATTCCTAAAAAACTGAGCAGCGATGAGAGAAAACTTATCGAGGAACTCTCGGAGTTGAGCAAAGGCAAGACTGCCGCAAGTAGGAGATGA 1314 0.4422 MAVTPFGNTSATQWGIRPQIIARSSTIAKFASSRDNVTSRVNFMASPSSTFFARDSLRFNTGSYQTLHRRRGSRFIVRAGTDFYTVLGVSKNSTKSEIKTAYRKLARNYHPDVNKEPGAEEKFKEISNAYEVLSDDEKRSIYDKYGEAGLKGQGMGMGDFSNPFDLFETLFEGMGGGMGSRGSWNGAVDGEDEYYSLVLNFKEAVFGVEKEIEIKRLENCGTCDGSGAKPGTKSSRCNTCGGQGRVVTQTRTPLGIFQQSMTCSSCNGTGETRTPCSTCSGDGRVRKSKRISLKVPAGVDSGSRLRVRNEGNTGRRGGAPGDLFVILEVIPDPVLKREDTNILYSCKVSYIDAILGTTIKVPTVDGMVDLKIPSGTQPGSTLVMAKKGVPLLNKKNMRGDQMVRVQVEIPKKLSSDERKLIEELSELSKGKTAASRR 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03328 437 ProSiteProfiles Zinc finger CR-type profile. 207 288 IPR001305 GO:0031072|GO:0051082
Trre5g03328 437 Hamap Chaperone protein DnaJ [dnaJ]. 79 433 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Trre5g03328 437 Pfam DnaJ domain 82 143 IPR001623 -
Trre5g03328 437 NCBIfam molecular chaperone DnaJ 82 426 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Trre5g03328 437 SUPERFAMILY Chaperone J-domain 80 182 IPR036869 -
Trre5g03328 437 ProSiteProfiles dnaJ domain profile. 82 146 IPR001623 -
Trre5g03328 437 FunFam Chaperone protein dnaJ 1, mitochondrial 330 437 - -
Trre5g03328 437 Gene3D - 190 325 - -
Trre5g03328 437 PRINTS DnaJ domain signature 102 117 IPR001623 -
Trre5g03328 437 PRINTS DnaJ domain signature 138 157 IPR001623 -
Trre5g03328 437 PRINTS DnaJ domain signature 84 102 IPR001623 -
Trre5g03328 437 PRINTS DnaJ domain signature 118 138 IPR001623 -
Trre5g03328 437 ProSitePatterns Nt-dnaJ domain signature. 123 142 IPR018253 -
Trre5g03328 437 Pfam DnaJ central domain 220 283 IPR001305 GO:0031072|GO:0051082
Trre5g03328 437 FunFam Chaperone protein dnaJ A6 chloroplastic 79 183 - -
Trre5g03328 437 Gene3D - 220 283 - -
Trre5g03328 437 Gene3D DnaJ domain 79 183 IPR036869 -
Trre5g03328 437 FunFam Molecular chaperone DnaJ 212 288 - -
Trre5g03328 437 SMART dnaj_3 81 138 IPR001623 -
Trre5g03328 437 SUPERFAMILY HSP40/DnaJ peptide-binding domain 188 343 IPR008971 GO:0006457|GO:0051082
Trre5g03328 437 CDD DnaJ_C 191 413 - -
Trre5g03328 437 Pfam DnaJ C terminal domain 195 410 IPR002939 -
Trre5g03328 437 FunFam Putative Mitochondrial DnaJ chaperone 270 325 - -
Trre5g03328 437 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 207 287 IPR036410 -
Trre5g03328 437 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 40 433 - -
Trre5g03328 437 CDD DnaJ 82 135 IPR001623 -
Trre5g03328 437 Gene3D - 330 437 - -
Trre5g03328 437 CDD DnaJ_zf 220 283 IPR001305 GO:0031072|GO:0051082
Trre5g03328 437 SUPERFAMILY HSP40/DnaJ peptide-binding domain 335 421 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03328 Trre-Chr5 29878796 29883326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03328 83 145 C2H2 Transcription Factor Family AT1G74250 44.928 2.23e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03328 K03686 - gmx:100786143 737.643