Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03310 ATGGAAGAACGTTATGAGATTATTAAAGGTATTGGGTCAGGAAATTTTGGAGTAGCAAAGCTTGTTAGGGAGAGACAGAGTGGTAAACTATATGCTGTCAAAATCATTGAGAGAGGCCTTAAGATTGATGAACATGTGCAAAGGGAGATTATAAATCATAGATCCTTGAAGCATCCCAATATCATTAGATTTAAGGAGGTTTTATGTACTCCAGCTCATCTAGCTATAGTGATGGAGTATGCAGCAGGTGGAGAACTATTTGAAAGAATATGTAGTGCCGGTAGATTCTGTGAAGACGAGGCAAGATATTTCTTCCAGCAGTTGATTTCTGGGGTCAGCTATTGTCATTCAATGGAAATATGCCATAGAGATCTTAAGCTTGAAAACACACTTTTAGATGGAAGTTCTTCACCACAACTCAAAATATGTGACTTTGGTTATTCCAAGTCTTCTGTTCTGCATTCTCAGCCTAAATCAACAGTGGGAACTCCAGCATATATTGCACCAGAGGTATTGTCAAGAAGAGAGTATGATGGAAAGGTTGCTGATGTTTGGTCTTGTGGGGTTACCTTGTATGTGATGCTAGTTGGTGGTTATCCTTTTGAAGATCCAGATGATCCAAGAAATTTTAGAAAGACAATTGAGAGAATCCTAAAGGTCCACTATTCAATTCCTGATTATGTTCGTGTCTCCAAAGATTGTAGACACCTTTTATCTCAAATATTTGTGGCCAACCCCGAGAAGAGAATCACTATCCCAGAAATTAAAAAGCACCCTTGGTTCCTTAATAAATTGCCAATGGAATTTGTGGAGGAAGGAAAAAATAATAAGTTAGAAAATGATGTGAATGGTGTGGTTGATTCATCTCAAAGTATTGAGGAAATACAATCCATAATTCAAGAGGCAAGGAAGCCAGGTGAAGGCCCAAAAATTGATGGACAATTTGTTGGAGGAGCCATGGATTTTGATGAGATGGATGCAGATGATGATTTTGATGATGATATAGAAACAAGTGGAGATTTTGATTTTGTTTGTGATATGTGA 1044 0.3774 MEERYEIIKGIGSGNFGVAKLVRERQSGKLYAVKIIERGLKIDEHVQREIINHRSLKHPNIIRFKEVLCTPAHLAIVMEYAAGGELFERICSAGRFCEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGSSSPQLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLSRREYDGKVADVWSCGVTLYVMLVGGYPFEDPDDPRNFRKTIERILKVHYSIPDYVRVSKDCRHLLSQIFVANPEKRITIPEIKKHPWFLNKLPMEFVEEGKNNKLENDVNGVVDSSQSIEEIQSIIQEARKPGEGPKIDGQFVGGAMDFDEMDADDDFDDDIETSGDFDFVCDM 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03310 347 PANTHER SERINE/THREONINE KINASE 3 287 - -
Trre5g03310 347 FunFam Serine/threonine-protein kinase SRK2E 81 269 - -
Trre5g03310 347 ProSiteProfiles Protein kinase domain profile. 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g03310 347 SUPERFAMILY Protein kinase-like (PK-like) 3 271 IPR011009 -
Trre5g03310 347 Gene3D Transferase(Phosphotransferase) domain 1 81 268 - -
Trre5g03310 347 Pfam Protein kinase domain 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g03310 347 SMART serkin_6 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g03310 347 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Trre5g03310 347 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Trre5g03310 347 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Trre5g03310 347 CDD STKc_SnRK2 4 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03310 Trre-Chr5 29687643 29690984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03310 4 271 CBL-interacting serine-threonine protein kinases AT4G24400 42.446 3.04e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Trre5g03310 Pkinase 4.7e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03310 K14498 - gmx:100807981 555.058