Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03296 ATGGGGACAACGTCCTTCTTTTTCACCAACATTCCACCGGAGTCTACGACAGTGGAGCTATGGAAAAGATTCGGACGGTTCGGACGTGTGGGAGAGGTTTACATCCCTAATAGGCTCGATAAACAAGGCCGGCGATTTGGCTTTGTCAAGTTTCGTGATGTTAGGGATGCAACAGAACTGTTGAGGGCGATCTCTAATATCTGGGTTGGATCATTCAAGCTGAGAGTGAACAAAGCTAGATTCAGAAGGGATGAAGAGGAGAGGGAGCCAGATCAAGCTCAACCGGTGGTTAGAAAGGAGGTTAATGCAGCACCACCAGCTCATTGTAAACAGGGTTGTTCCTTCAAGGAAGCTCTTACGCAGCAGGTGGGGAAGGAGGGTCCACCGGTGGTGGTGGCTCAGAAGACGGAGAGGGGTGAAGACTTGAAGATCATTTGGGAACTGGAGGTGGAAGAAGACATGGTGGCAGTGCTTAAGGGTGCGTTTGTGGGTTTTCTCAATGAAGACATTGAACTGAAGGTGATCCAAAAGTACTTCTCTTTGAATGGCTTTCACAATCTGAAAGTAATTACGATGGGTCATATGAAGGTATTACTATCTATTGTGGTGGAGGAGGAGGTTAAGGAGATAATGAGTACAGTGGGTGGGTGGAGTAAATGGTTCAACCACTTTGTTCCGTGGTCCCCGGCGTCCGTGTCGAATCATAGGGAGGTTTGGTTGAGCTGCTACGGTGTTCCTCTCTTTGCTTGGGGTGAATCGCTCTTTAAAGCGTTAGCCTACAAATATGGATCTTTTATTACGGTTGATGATGCAACAAAACATTTGATGCGTGCTGATGTTGCTAGAATCAAAGTTTTTACCTCTAATGAGAAGCTTATTGATTCATCGCTGAAGATTATGGTGTTGGGCCAGAAGTTTGTTATCAAAGTGTTGGAAGTTACTGGAAGGGCGGGGGAAGGCGAAGAAGTGTGCTGTGGCGGTTGCTGA 987 0.4691 MGTTSFFFTNIPPESTTVELWKRFGRFGRVGEVYIPNRLDKQGRRFGFVKFRDVRDATELLRAISNIWVGSFKLRVNKARFRRDEEEREPDQAQPVVRKEVNAAPPAHCKQGCSFKEALTQQVGKEGPPVVVAQKTERGEDLKIIWELEVEEDMVAVLKGAFVGFLNEDIELKVIQKYFSLNGFHNLKVITMGHMKVLLSIVVEEEVKEIMSTVGGWSKWFNHFVPWSPASVSNHREVWLSCYGVPLFAWGESLFKALAYKYGSFITVDDATKHLMRADVARIKVFTSNEKLIDSSLKIMVLGQKFVIKVLEVTGRAGEGEEVCCGGC 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03296 328 CDD RRM_SF 7 77 - -
Trre5g03296 328 Pfam Domain of unknown function (DUF4283) 159 285 IPR025558 -
Trre5g03296 328 Gene3D - 2 102 IPR012677 -
Trre5g03296 328 SMART rrm1_1 5 77 IPR000504 GO:0003723
Trre5g03296 328 SUPERFAMILY RNA-binding domain, RBD 5 183 IPR035979 GO:0003676
Trre5g03296 328 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 81 IPR000504 GO:0003723
Trre5g03296 328 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 74 IPR000504 GO:0003723
Trre5g03296 328 PANTHER DUF4283 DOMAIN PROTEIN 149 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03296 Trre-Chr5 29290492 29291478 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03296 4 87 Eukaryotic Initiation Factors Gene Family AT1G71770 30.952 6.16e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03296 - - tpra:123896113 165.236