Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03288 ATGGAATGTGAAAAGGTTGTTCATATTATTGATCTCCATTGTTCCGAGCCAGCTCAGTGGATAAATCTTATACAAACTTTAAAGACACGCCAAGGAGGTCCGCCGCATCTCAAAATTACAGGTATTCATGAAAAGAAGGAGGTATTGGACCAACTGAGCTTTCATTTGACAGCTGAAGCCGGAAATTTGGATTTTCCTTTACAGTTCAATCCAATTGTTAGCAAACTCGAAGATGTTGATTTTGAAAACTTGCCTGTCAAGACAGGAGATGCTGTTGCAATTACTTCTGCTCTTCAGCTGCAAAACTGA 309 0.3981 MECEKVVHIIDLHCSEPAQWINLIQTLKTRQGGPPHLKITGIHEKKEVLDQLSFHLTAEAGNLDFPLQFNPIVSKLEDVDFENLPVKTGDAVAITSALQLQN 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03288 102 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 102 IPR005202 -
Trre5g03288 102 Pfam GRAS domain family 2 101 IPR005202 -
Trre5g03288 102 ProSiteProfiles GRAS family profile. 1 102 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03288 Trre-Chr5 29160293 29160601 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03288 1 101 GRAS Transcription Factor Family AT1G50420 56.436 4.71e-37 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre5g03288 GRAS 5.8e-28 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03288 - - mtr:120579480 184.111