Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03287 ATGGAATGTGAAAAGGTTGTTCATATTATTGATCTCCATTGTTCCGAGCCAGCTCAGTGGATAAATCTTATACAAACTTTAAAGACACGCCAAGGAGGTCCGCCGCATCTCAAAATTACAGGTATTCATGAAAAGAAGGAGGAGATGCTGTTGCAATTACTTCTGCTCTTCAGCTGCAAAACTGATGATGAAATGGTTGGGAAGATCTCACCAGCAGGACCATCCTCTATCAATCTGCAGAGAGCAGGTCAACTGGGTCAGAGGACTTTCGCGGAGTTGCTCAAAAGAGACATGATCAATGCATATATCTTGAGTCCTGATTCAGCATTATCACCTCTTTTTTTAGGCGCTTCACCTAAGATGGGGATATTTCTTAATGCTATGCGGAAACTAAAATCGAAACTTTTAGTGATTACTGAACAAGAATCAAATCTAAATGGATGTAATTTAATTGAGATAATAGATCGAGCATTATACTTTTACAGTTCACTTTTTGCTGGCTTGGACTCAACTGTTACGAGAACATCAGTAGAGAGACAAAAACTTGAAAGCTTGCTTTTTGGAGAGCAAATAAAGAACATCATTACTTGTGAGGGAGTTGATAGAAAGGAGAGGCACGAGAAGGTTGAGAAATGGATTAGAAGGCTTGATATGGCTGGACTCGAGAAGGTACATTTGAGTTACAACGGGAGGATAGAAGCAACAAGTCTATTGCAACGTCATAGTCATAAATACAAGTTTAAAGAAGAAAATGATTGTTTGCTTATCTGTTGGAGTGATAGACCACTCTTTTCTGTATCGGCATGGAGTTTTAAGAGATGA 822 0.3905 MECEKVVHIIDLHCSEPAQWINLIQTLKTRQGGPPHLKITGIHEKKEEMLLQLLLLFSCKTDDEMVGKISPAGPSSINLQRAGQLGQRTFAELLKRDMINAYILSPDSALSPLFLGASPKMGIFLNAMRKLKSKLLVITEQESNLNGCNLIEIIDRALYFYSSLFAGLDSTVTRTSVERQKLESLLFGEQIKNIITCEGVDRKERHEKVEKWIRRLDMAGLEKVHLSYNGRIEATSLLQRHSHKYKFKEENDCLLICWSDRPLFSVSAWSFKR 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03287 273 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 266 IPR005202 -
Trre5g03287 273 Pfam GRAS domain family 122 269 IPR005202 -
Trre5g03287 273 Pfam GRAS domain family 2 47 IPR005202 -
Trre5g03287 273 ProSiteProfiles GRAS family profile. 1 270 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03287 Trre-Chr5 29159656 29160601 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03287 1 273 GRAS Transcription Factor Family AT1G50420 39.571 6.17e-68 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre5g03287 GRAS 1.1e-44 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03287 - - gmx:106798410 400.979