Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03282 ATGAAGAGACTCTCCACCTCAGATTCTTCTAATCCTCTCATCACTATCTCTCCATCAACAGAGGAACAAAGTCCAAGGAACAAACATGTGTATGGTATGGAGTTTCAATCAATGATGTTGGATGGATTTGAAGAAGAAGGGTGTGGTGAAGAAACCGGCCATCAATCGGAGAAGAAACGGCGACTAAGAGTGGATCAAGTTAAGGCTTTAGAGAAAATTTTTGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAAGAGAAGCTTGCTATAGAACTTGGGTTGCAGCCTAGACAAGTTGCTGTTTGGTTCCAAAACCGTCGTGCTCGATGGAAGACTAAACAGTTGGAAAGAGATTATGGTGTTCTTAAAGCTAATTATGATGCTCTTAAGCTCAAATATGATGCAATTGCTCAAGATAACAAAGCTCTTCACAAGGAGATTAAGGAATTGAAATCAAAGCTGGAAGATGGAGAAAAAAGCGCAAGCAGTGTTTTGGTGAAAGAGGAGATAACGATGCTTGAATCTGCCGAAGACAAGGATAACCCATCTTCAGAAACATCAATTCCTAGTTCAGAATCCAAGGATCACTTGAATTATGACTGCATAATCAACAACAATGATATTGGTATTGGAGAAGCTTCTTCACTCTTTCCGGTAGACTTGAAAGACGGTTCTTCAGACAGCGACTCTAGCGCGATTTCTTCATCCGGGGTTCTTCAAAGTCACCTTTTGCTGTCTCCTGACTCTTCCACCATGAGTTGCTTCCAATACCAGAAATCCTATCAAGTGAAGATGGAGGAGCAGAATTTCTTAAGTGCAGATGAGGCATGCAATTTTTTCTCGGATGATCAAGCACCGACGCTACAATGGTACTGTCCTGAACAATGGAGTTAA 894 0.4128 MKRLSTSDSSNPLITISPSTEEQSPRNKHVYGMEFQSMMLDGFEEEGCGEETGHQSEKKRRLRVDQVKALEKIFEVENKLEPERKEKLAIELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKLKYDAIAQDNKALHKEIKELKSKLEDGEKSASSVLVKEEITMLESAEDKDNPSSETSIPSSESKDHLNYDCIINNNDIGIGEASSLFPVDLKDGSSDSDSSAISSSGVLQSHLLLSPDSSTMSCFQYQKSYQVKMEEQNFLSADEACNFFSDDQAPTLQWYCPEQWS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03282 297 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Trre5g03282 297 PRINTS Lambda-repressor HTH signature 84 93 IPR000047 GO:0003677
Trre5g03282 297 PRINTS Lambda-repressor HTH signature 93 109 IPR000047 GO:0003677
Trre5g03282 297 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Trre5g03282 297 FunFam homeobox-leucine zipper protein ATHB-6-like 61 107 - -
Trre5g03282 297 MobiDBLite consensus disorder prediction 1 27 - -
Trre5g03282 297 Pfam Homeobox associated leucine zipper 113 154 IPR003106 GO:0006355|GO:0043565
Trre5g03282 297 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 39 291 IPR045224 GO:0003700
Trre5g03282 297 CDD homeodomain 58 114 IPR001356 GO:0003677
Trre5g03282 297 MobiDBLite consensus disorder prediction 1 26 - -
Trre5g03282 297 Gene3D - 52 120 - -
Trre5g03282 297 Coils Coil 112 160 - -
Trre5g03282 297 Pfam Homeodomain 58 111 IPR001356 GO:0003677
Trre5g03282 297 SUPERFAMILY Homeodomain-like 45 115 IPR009057 -
Trre5g03282 297 MobiDBLite consensus disorder prediction 173 193 - -
Trre5g03282 297 SMART HOX_1 56 117 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03282 Trre-Chr5 29109036 29110707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03282 1 297 Homeobox Transcription Factor Family AT4G40060 46.129 6.24e-71 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre5g03282 Homeodomain 7.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03282 K09338 - gmx:100796213 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g04961 7 56709525 56711605 Trre5g03282 5 29109036 29110707 PCT