Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03256 ATGGACTGTATGCCTCTTTGTAATTACAGATTACCAACACCTGGAGAAAGAGAAAAATGGAAACACATTTTTGACACTACCATAGATCCAAATCTGGTACCAATTGAAATCCCTCAGCCTTTTTTCAACAAAATGAAAAGTGAGTTTATAAAGCACACATTTGGTTGGATCAGGGAAATGAAATTCATGGTTAGATATCTCCAATCCAATAGTGGTATCAAGCTCTCCTCTGGAGTGTGTGTTTCTCGATATTTTGGATTTGCTGTACCAACAAGGGTGACACTTAGCTATGTGATTGACGAGAATACTTTTTGGATGAGAATTTACCCTCCACTTCAACCTGTGAAAACTGAATTTCCACCAGAGGAAACTTTGAAAAGGAAGCATCAAAATGATGATCAAGATGAGCCAAATTCCAAGAGGTGCAAGAGACCTAAAGCCAACAAACAAGCTGTGTATTTGAAGTCCCCCCCTCCATGTCAAAATTCCAAGAATAATGATGATCAAGATGAGCCAAATTCCAAGAAGTGCAAGAAACCTAGAGGCAACAAACAAGCTGTGTCTTTGAAGTCCCCCCCTCCATGTAAAAAACAGAAAATTCTGAAGTCTACCCCAAAGGAATTAAGCAAACAACGACTCCCAAATTTGAAGATTCATGCATCTGAGAGAAAAAAATATTTGAAGTCCACACCAAAGAAATCAAACAAACAACATCAGTCTAAGCATTCAAGGAAACCAGTAATTGTAAAGCTGAATCCTGATGGAAGCTATAGTTGGGAGAAGATTGTAACTACAGCTGCTGCAGCTGATGCAAGACCTCAAGTCATGCATTTTCCTAAGCAATTGTCTACATTGTTTTTGGGAGAAAAACAAAACAAGATGTTGGTCCAAGCTAGAGCAGGAGATACATTCTCTTGCAAGCTTATTACAGCGGGAAGGAATGCAGCTGAAAAATATATATCAAAAGAGTGGTCCAAATTTGTGAGAAGAAACAACCTCCAAGCTGGAGACAAGCTCATTTTCACTCTTCAGAACCCACCAACAAAACTCCTGATTCAGATCATCCATTGTAGTGCTCACGACTGA 1086 0.3913 MDCMPLCNYRLPTPGEREKWKHIFDTTIDPNLVPIEIPQPFFNKMKSEFIKHTFGWIREMKFMVRYLQSNSGIKLSSGVCVSRYFGFAVPTRVTLSYVIDENTFWMRIYPPLQPVKTEFPPEETLKRKHQNDDQDEPNSKRCKRPKANKQAVYLKSPPPCQNSKNNDDQDEPNSKKCKKPRGNKQAVSLKSPPPCKKQKILKSTPKELSKQRLPNLKIHASERKKYLKSTPKKSNKQHQSKHSRKPVIVKLNPDGSYSWEKIVTTAAAADARPQVMHFPKQLSTLFLGEKQNKMLVQARAGDTFSCKLITAGRNAAEKYISKEWSKFVRRNNLQAGDKLIFTLQNPPTKLLIQIIHCSAHD 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03256 361 MobiDBLite consensus disorder prediction 121 143 - -
Trre5g03256 361 ProSiteProfiles B3 DNA-binding domain profile. 261 358 IPR003340 GO:0003677
Trre5g03256 361 Gene3D - 178 359 IPR015300 -
Trre5g03256 361 MobiDBLite consensus disorder prediction 121 246 - -
Trre5g03256 361 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 108 356 IPR044837 -
Trre5g03256 361 MobiDBLite consensus disorder prediction 200 228 - -
Trre5g03256 361 SUPERFAMILY DNA-binding pseudobarrel domain 268 351 IPR015300 -
Trre5g03256 361 MobiDBLite consensus disorder prediction 229 245 - -
Trre5g03256 361 Pfam B3 DNA binding domain 276 355 IPR003340 GO:0003677
Trre5g03256 361 CDD B3_DNA 276 355 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03256 Trre-Chr5 28730786 28732294 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre5g03256 B3 4.8e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03256 - K12567 tpra:123904760 198.749