Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03255 ATGGGGCTCTCAAACTTTCCCTATGCAGCAGAAGGAGTTGTACCTGTTCTTGTAATGAACACAGTTCTATCTATGGTACTATTAAAGAACATGTTCAGATCCATGCTTCAAGTAGTTGGTTGCACATCATCAATCACCAATTCTCAAAATATTGATGAACAAGAAGAAGAAGAGAATAGTACTAATAATTCATCAAGGGAAAGGAGGGTGTCAATAACAAATTACAAGTCCTTGTGCTACAACATAGGTAGAAGTCCTATGATAGAGTGTTGTGTTTGTTTGTCTGGTTTTGAAGCAAATCAAGAGGTGAGTGAGTTGCCTTGCAAGCATTTCTTCCATAGAGATTGCTTAGATAAATGGTTTGATAACAAACACACTTCATGTCCTTTATGTCGTTCTATGGACTAA 408 0.3701 MGLSNFPYAAEGVVPVLVMNTVLSMVLLKNMFRSMLQVVGCTSSITNSQNIDEQEEEENSTNNSSRERRVSITNYKSLCYNIGRSPMIECCVCLSGFEANQEVSELPCKHFFHRDCLDKWFDNKHTSCPLCRSMD 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03255 135 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Trre5g03255 135 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 135 IPR013083 -
Trre5g03255 135 MobiDBLite consensus disorder prediction 49 68 - -
Trre5g03255 135 Pfam Ring finger domain 89 132 IPR001841 -
Trre5g03255 135 PANTHER - 1 134 IPR044249 -
Trre5g03255 135 SMART ring_2 90 131 IPR001841 -
Trre5g03255 135 SMART ringv_2 89 132 IPR011016 GO:0008270
Trre5g03255 135 CDD RING-H2_PA-TM-RING 89 132 - -
Trre5g03255 135 SUPERFAMILY RING/U-box 89 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03255 Trre-Chr5 28721821 28722228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03255 1 133 C3H Transcription Factor Family AT2G04240 33.784 4.66e-21 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03255 K16285 - gmx:100811790 185.652