Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03234 ATGTTAGGAGAAGAAGGAAAAGAGAAACCCTCCTCTATCAGGAGAACCTATTCACGTTCAGTTTCATGGACAGATCGTTCTCCGAATAGCCGTAAACCGCCGCCTGGAAATAGTAAACCACGACCACTTTTACCACCTCTTCAGCCTCTCTCAATCAATAAACGTAGCGTTGAAGAATGGCCAAGTGCTGGATCTGATGATCTTGGTGTTTGGCCTCTTCCACAAACTCCAAGAGGGTCTATTACAATCAATGAACAACCTACCAAAGATTTTCAGTTCAAAAGGGATAAATTAGCTTTCTTTGACAAAGAGTGTTCCAGAATTGCAGAACATATTTACTTGGGAAGTGACACGGTTGCGAAAAACCATGAACTTCTCAGACAGAAAGGAATAACTCATGTGCTTAACTGTGTTGGGTTTGTTTGTCCTGAGTATTTCAAAAGTGATTTTGTTTATAAAACACTTTGGTTGCAGGATAGTCCAACAGAGGATATAACATGTATTCTCTATGATGTGTTTGATTACTTTGAAGATGTTAGAGAACAAGGCGGCCGTGTTCTTGTTCATTGTTGTCAAGGGGTTTCTCGATCGACCGCTTTGGTGATTGCTTATCTCATGTGGAGGAAAGGACAGAGTTTTGAAGATGCTTTTCAGTTTGTGAAGACTGCTAGAGGAGTCACAAATCCAAACATGGGTTTTGCTTGTCAACTCTTGCAGTGTCAGAAACGTGTACATGCTATGCCTGCAAGTCCTAGTTCTATTCTAAGGATGTATCGAATGGCTCCTCACTCTCCTTATGACCCTCTTCATCTTGTTCCTAAGATGGTTAACCAACCAGGTTCATTAGCACTTGATTCTCGCGGTGCTTTCATTGTTCATGTTCCTTCTGCTATTTATGTGTGGATTGGGAAAAATTGTAACTTGTTTATGTCATGCAATGCAAAGAGTGCTGCTTTTCAGGTCGTGCGTTACGAGGGAGTAAAGGGTCCAATTCTGAGCATCCGTGAAGATCAAGAATCAACCGAGTTTTGGGTTGCTCTTTCTGACGAGCAGCGTTTGTCAGATAATTCTGATAAACAGCTGGTGGTATTACCTTCTGAAAAGATGGAGATTGCTAGTCTAAGAAAAGTTGATGCTTATGATTTGGATTTCGAGATTTTCAACAAGGCAGTTTCTGGTGGGGTTGTTCCGCCTTTTTCTGTAGCTAATGCTGGATCAGAAACTTGTCTTCCTGCTAAAGAACATGGTTGGGCAAGATTGAGGAAGAAATTTGCCAGTGGTGACATGAAAGAAATCTTAACATCCCCTAAGTGGAAGTGTGATGTGATTATGGAGGAAGAAAAACAAGATTTTGTAGCTGATGATGATGACGATCATCCTTTGTCAGCTTCACCATCATCAAATAATCCCAGTGACTGTGGTTCCCCGGATTCCTTTGAATGTTATCCAACCAGCTTGGGTAAGGCAAAAGATACCGTTGAAGACATGGACTTGTCCGAATCTGATCATGGCGTTGCTTCTTTGCTGCCACTATCTCCTTCTTTTCCTTGTTTTCTAAGCAGCAGCCCAAAATTCAATTACAAATCGCCAACACTTTCACCTTCAAGTTCTGACTATGCAAGTTCATTTACATTTTCACCTTCCTCTACCAATTGGTCAGACCTGTCATTCATGTCTTCTAGGCAGCCGTCACCATCTGGCCACGAATCATTTGAACCCTTTTATGCTAAAGATGTGTCTTTCTCCACAAGTTCCTCTTTACCTAACAAAGAAGTTCTCTCTTTGCCGTCAGAGTCATTTTCGACTGATCACACCTTGGAAGGGGAAAACTCCTATTTGCCATCATCGAAAGGATCTTTTCTCTCTATTGCAGCACGAAGAGGGAGTCATATACCGCCTCCGATGTTGCTAACCTCTGTCAATGAATCCTCTAAAGTTCGTAAGAACCTGGAGGAATACACCTACTAA 1968 0.4182 MLGEEGKEKPSSIRRTYSRSVSWTDRSPNSRKPPPGNSKPRPLLPPLQPLSINKRSVEEWPSAGSDDLGVWPLPQTPRGSITINEQPTKDFQFKRDKLAFFDKECSRIAEHIYLGSDTVAKNHELLRQKGITHVLNCVGFVCPEYFKSDFVYKTLWLQDSPTEDITCILYDVFDYFEDVREQGGRVLVHCCQGVSRSTALVIAYLMWRKGQSFEDAFQFVKTARGVTNPNMGFACQLLQCQKRVHAMPASPSSILRMYRMAPHSPYDPLHLVPKMVNQPGSLALDSRGAFIVHVPSAIYVWIGKNCNLFMSCNAKSAAFQVVRYEGVKGPILSIREDQESTEFWVALSDEQRLSDNSDKQLVVLPSEKMEIASLRKVDAYDLDFEIFNKAVSGGVVPPFSVANAGSETCLPAKEHGWARLRKKFASGDMKEILTSPKWKCDVIMEEEKQDFVADDDDDHPLSASPSSNNPSDCGSPDSFECYPTSLGKAKDTVEDMDLSESDHGVASLLPLSPSFPCFLSSSPKFNYKSPTLSPSSSDYASSFTFSPSSTNWSDLSFMSSRQPSPSGHESFEPFYAKDVSFSTSSSLPNKEVLSLPSESFSTDHTLEGENSYLPSSKGSFLSIAARRGSHIPPPMLLTSVNESSKVRKNLEEYTY 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03234 655 CDD DSP 105 239 - -
Trre5g03234 655 MobiDBLite consensus disorder prediction 33 47 - -
Trre5g03234 655 ProSitePatterns Tyrosine specific protein phosphatases active site. 188 198 IPR016130 GO:0016311|GO:0016791
Trre5g03234 655 MobiDBLite consensus disorder prediction 15 32 - -
Trre5g03234 655 SMART dsp_5 104 243 IPR020422 GO:0006470|GO:0008138
Trre5g03234 655 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 170 224 IPR000387 GO:0016311|GO:0016791
Trre5g03234 655 Gene3D Severin 257 355 IPR029006 -
Trre5g03234 655 PANTHER MKPA PROTEIN 11 649 - -
Trre5g03234 655 SUPERFAMILY Actin depolymerizing proteins 251 350 - -
Trre5g03234 655 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 94 246 IPR029021 -
Trre5g03234 655 MobiDBLite consensus disorder prediction 1 48 - -
Trre5g03234 655 Pfam Dual specificity phosphatase, catalytic domain 112 242 IPR000340 GO:0008138|GO:0016311
Trre5g03234 655 ProSiteProfiles Dual specificity protein phosphatase domain profile. 104 246 IPR020422 GO:0006470|GO:0008138
Trre5g03234 655 MobiDBLite consensus disorder prediction 453 476 - -
Trre5g03234 655 Gene3D Protein tyrosine phosphatase superfamily 82 246 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03234 Trre-Chr5 28470750 28473735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03234 1 140 Protein tyrosine phosphatase (PTP) family AT3G55270 40.860 3.15e-31 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03234 - - lja:Lj6g3v0574850.1 907.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g04904 7 56204690 56208315 Trre5g03234 5 28470750 28473735 PCT