Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03228 ATGGATATGTTATCTGAGAATGAGAGTGAGTCTGAAAACGAACAACATGATGATGCAGAGGAAATAATTTGCTGTGATAGTTGCTCTTCAACATTTCATGAAAGTTGTTTGGATATAAAGATTGTAGAACTTGTGTTGATGCCAACAATGACGAGACCGTTCATTTTAGTAGTGCATTTATATGTTGAAAAAGATGTCAAGAGGTAA 207 0.343 MDMLSENESESENEQHDDAEEIICCDSCSSTFHESCLDIKIVELVLMPTMTRPFILVVHLYVEKDVKR 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03228 68 SUPERFAMILY FYVE/PHD zinc finger 15 50 IPR011011 -
Trre5g03228 68 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 53 IPR013083 -
Trre5g03228 68 Pfam PHD-finger 15 41 IPR019787 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03228 18 40 PHD Transcription Factor Family AT5G36670 69.565 3.77e-07 43.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre5g03228 PHD 3.9e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03228 - - dcr:108199113 45.4394