Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03209 ATGGGAAACAAAGGTGGATTTTTTCGTTATGCAGATGGATTTGACAAGTTGCTATTATTCTTTGGAACTTTGGGTTGTATTGGAGATGGTATACAAACTCCACTCACTATGCTTGTTCTTGGTGATTTGATAGATGATTATGCTCGTGGTGGTTCTGAACATACTGTATCCATTCAAAATATCAACAAGTATGCTCTCAAGCTAGTTGGTGTTGCCATTGGAGTTGCTGTCTCTGCTTTTATTGTAGGAGTATGTTGGACAAGAACTGCAGAAAGACAAACTTCGCGGATGAGAATCGAATATCTTAAATCAATCCTAAGGCAGGAAGTTGGTTTCTTTGACAAGCAAAGTAACTCTTCCACAACATTCCAAGTAATTGCAACCATTACTTCTGATGCTCAAACAATCCAAGATACCTTGTCTGATAAGGTACCTAATACTCTAGTTCATCTCTCAGCATTTTTCTCTAGCTTTATAGTGGCACTATTCCTCTCTTGGAGACTTGCAGTAGCCGCTTTTCCATTTTCAATTATGATGATCATGCCAGCACTCATATTTGGAAATTCTATGAAAGAGCTTGGTGGTAAAATGAAGGACGCGTTCGGAGTTGCTGGTAGTATAGCAGAACAAGCAATCTCATCTGTTCGAACTGTTTATTCGTATGTAGGTGAGAAGCAAACACTGAAAAGGTTTAGTTCTGCTCTTGAAGCATGTATGCAGCTTGGCATAAAGCAAGGTCAAACAAAGGGAGTGGTTATTGGAAGTTTTGGTTTGCTATATGCTACTTGGGCCTTCCAATCTTGGGTTGGAAGTGTTCTGGTTAGGACCAAAGGTGAAAAGGGTGGGCATGTGTTTTGTGCTGAAATATCCATTATTTGGGGTGGATTGTCTCTGATGAATGCACTCCCAAATTTGGCTTCCATGTTAGACGCGACAGTAGCAGCTACTCGGATTTTCGAGATGATTGACAGAAAGCCGACCATAAACGCTACCAAAGAAAAAGGAAGGATTTTGAAGCATACAAGAGGAGAGATTACATTTAAAGAGGTTGAGTTTAGTTACCCTTCAAGGCCAGATACACCGATTCTCCAAGGACTCAATCTTAAAGTTCAGGCATGTAAAACAGTAGGACTAGTTGGAGGAAGTGGTTCTGGCAAATCTACTATAATCTCTCTACTTGAAAGATTCTATGAGCCGACAAGTGGTGAGATATTACTCGATGGACATGATATAAAGAGACTGCACCTTAAGTGGTTTAGGTCTCTGATAGGATTGGTAAATCAAGAGCCAATTCTCTTTGCAACATCCATAAGAGAGAACATTCTATTTGGCAAGGAAGGAGCTTCAATAGAAGATGTAATAACCGCAGCGAAAGACGCAAATGCACATGATTTCATTGTTAAACTTCCTGATGGATATGAAACTCAAGTAGGACAACTAGGAGCTCAATTATCTGGAGGACAAAAGCAAAGGATTGCTATTGCAAGAGCTTTAATAAGAGACCCTAAAATCCTACTACTTGATGAAGCTACAAGTGCTTTGGATTCACAATCTGAAAGAATAGTACAAGATGCACTTGACTTGGCTTCTAGAGGTAGAACAACGATCATCATAGCTCACCGCCTTTCCACAATTCGTAAAGCTGATTCAATAGTAGTTCTTCAATCAGGAAAAGTGGTTGAATGTGGTTCACACAATGAGCTACTTCAACTAAACAATGGACAAGGTGGGATTTACACCAAAATGCTTCATTTGCAACAAATAAGTCAAAATGAAAATGCACAGCATCAAATAAACAAGAGCCCTCATGCAATGGAAAATCAAATAGCAAGTTCACATTCAAGCTGGCAAAGTACTCCAATTCATCACGAGTTTAGCACGGCACAACCATTTAGTGCCATATATTCAATCAGTGCTATAGGCTCTAGCTTTGATGATGACTACAGCAGTGAAAACTTGGAGAAACCTTACAGTTCCAAGATCTCGCACTGGCGTTTACTACAAATGAATGCTCCTGAATGGAAGCATGCTTTGTTTGGATGCTTAGGTGCCATTAGCTCAGGAATGTGCCAGCCATTTTATTCCTATTGCTTAGGGATAGTTGCTTCTGTTTACTTCATAGATGATAACTCTCTCATCAAATCACAAATCAGGTTGTACTCAATCATCTTCTGCTGCATAGCTGTTGTGAACTTCATCTCAGGCATCATTCAACATTACAATTTTTCCATCATGGGAGAGCGTTTGCTGAAAAGGGTGAGAGAGAATTTGCTAGAGAAGGTTTTGACCTTTGAGATAGGATGGTTTGATCAAGAGGAGAACACAAGTGCAGCAATCTGCGCGCGTTTAGCTACCGATGCTAACTTGGTTCGATCCCTCGTTGCAGACCGAATGTCGTTGTTAGTTCAGGTTTTCGTAACTGCTTCGCTGGCTTTTGTACTTGGTTTAATCGTTACATGGAGGGTAGCTATTGTCATGATAGCTATGCAGCCTTTGGTGATTGCATGTCTCTATTCAAAAACCGTTCTCATGAAGAGTATGTCAGGCAAAGCGAAAAGTGCTCAAAGAGATGCTAGTCAATTAGCAATGGAAGCTACTTCCAACCACAGGACTATCGCTGCATTCTCTTCCGAGAAAAGGATACTAAATTTATTCAGAACTGCTATGGATGGTCCAAAGAAGGAAAGTATCAAGCAATCATGGATTTCAGGTTCTATACTTTCTATGTCACAATTCATGATGACAGCATCTATAGCTTTGACTTTTTGGTATGGAGGCATACTTTTAAATCATAAACTCGTCGAATCAAAGCAACTCTTACAAGTTTTCCTGATTTTGATGGGAACTGGTAAACAAATTGCTGATACTGGAAGCATGACTTCTGACATAGCTAAAAGTGGAAAAGCGATTAGTTCAGTATTTGCAATACTTGATAGGAAAACTGAGATTGAACCTGAAGATACTGGACACAGAAAGTTCAAAAAGACTTTGAAGGGCGATATAAAACTGAAAGACGTGTTTTTCTCATATCCTGCAAGGCCAGACCAAATGATTCTCAAGGGCTTAAATCTCGAGATTGAAGCTGGCAAAACAGTAGCATTAGTGGGACAAAGTGGCTCAGGAAAATCTACCATCATTGGCTTAATTGAAAGATTTTATGACCCTATTAAGGGTTCAATATTCATAGACAATTGTGACATTAAGGAGCTTCATTTGAAAAGTTTGAGATCACATATCGCATTGGTGAGTCAAGAACCTACCCTCTTTGCAGGAACCATACGCGACAACATTGTATATGGTAAGGAAGATGCATCAGAGGATGAAATACGAAAGGCTGCACGTCTTGCAAATGCTCATGAATTTATAAGTTCAATGAAAGATGGGTATAATACATACTGTGGAGAAAGAGGAGTGCAGCTATCAGGAGGGCAGAAGCAGAGAATAGCGATAGCTCGAGCAATGGTGAAGAATCCATCAATTCTTCTGTTAGATGAGGCAACAAGTGCTCTTGACAGTGTGTCAGAGAATTTAGTACAAGAAGCTTTGGAGAAAATGATGGTTGGAAGAACATGTGTAGTTATAGCTCATCGTTTGTCAACTATACAAAGTGTTGATTCCATAGCTGTGATTAAAAATGGAAAGGTGGTAGAACAAGGTTCTCATTCACAGTTACTTAACAATAGATCTAATGGGACTTATTACTCTTTAATTAGGCTACAACAAAGTCACTAA 3732 0.3955 MGNKGGFFRYADGFDKLLLFFGTLGCIGDGIQTPLTMLVLGDLIDDYARGGSEHTVSIQNINKYALKLVGVAIGVAVSAFIVGVCWTRTAERQTSRMRIEYLKSILRQEVGFFDKQSNSSTTFQVIATITSDAQTIQDTLSDKVPNTLVHLSAFFSSFIVALFLSWRLAVAAFPFSIMMIMPALIFGNSMKELGGKMKDAFGVAGSIAEQAISSVRTVYSYVGEKQTLKRFSSALEACMQLGIKQGQTKGVVIGSFGLLYATWAFQSWVGSVLVRTKGEKGGHVFCAEISIIWGGLSLMNALPNLASMLDATVAATRIFEMIDRKPTINATKEKGRILKHTRGEITFKEVEFSYPSRPDTPILQGLNLKVQACKTVGLVGGSGSGKSTIISLLERFYEPTSGEILLDGHDIKRLHLKWFRSLIGLVNQEPILFATSIRENILFGKEGASIEDVITAAKDANAHDFIVKLPDGYETQVGQLGAQLSGGQKQRIAIARALIRDPKILLLDEATSALDSQSERIVQDALDLASRGRTTIIIAHRLSTIRKADSIVVLQSGKVVECGSHNELLQLNNGQGGIYTKMLHLQQISQNENAQHQINKSPHAMENQIASSHSSWQSTPIHHEFSTAQPFSAIYSISAIGSSFDDDYSSENLEKPYSSKISHWRLLQMNAPEWKHALFGCLGAISSGMCQPFYSYCLGIVASVYFIDDNSLIKSQIRLYSIIFCCIAVVNFISGIIQHYNFSIMGERLLKRVRENLLEKVLTFEIGWFDQEENTSAAICARLATDANLVRSLVADRMSLLVQVFVTASLAFVLGLIVTWRVAIVMIAMQPLVIACLYSKTVLMKSMSGKAKSAQRDASQLAMEATSNHRTIAAFSSEKRILNLFRTAMDGPKKESIKQSWISGSILSMSQFMMTASIALTFWYGGILLNHKLVESKQLLQVFLILMGTGKQIADTGSMTSDIAKSGKAISSVFAILDRKTEIEPEDTGHRKFKKTLKGDIKLKDVFFSYPARPDQMILKGLNLEIEAGKTVALVGQSGSGKSTIIGLIERFYDPIKGSIFIDNCDIKELHLKSLRSHIALVSQEPTLFAGTIRDNIVYGKEDASEDEIRKAARLANAHEFISSMKDGYNTYCGERGVQLSGGQKQRIAIARAMVKNPSILLLDEATSALDSVSENLVQEALEKMMVGRTCVVIAHRLSTIQSVDSIAVIKNGKVVEQGSHSQLLNNRSNGTYYSLIRLQQSH 1243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03209 1243 Gene3D ABC transporter type 1, transmembrane domain 67 974 IPR036640 GO:0005524|GO:0016020
Trre5g03209 1243 Gene3D - 343 608 IPR027417 -
Trre5g03209 1243 SUPERFAMILY ABC transporter transmembrane region 664 985 IPR036640 GO:0005524|GO:0016020
Trre5g03209 1243 FunFam ABC transporter B family member 4 991 1243 - -
Trre5g03209 1243 Pfam ABC transporter transmembrane region 679 945 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g03209 1243 Pfam ABC transporter transmembrane region 20 276 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g03209 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 994 1240 IPR027417 -
Trre5g03209 1243 CDD ABC_6TM_Pgp_ABCB1_D2_like 667 983 - -
Trre5g03209 1243 ProSitePatterns ABC transporters family signature. 1140 1154 IPR017871 GO:0005524|GO:0016887
Trre5g03209 1243 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 345 581 IPR003439 GO:0005524
Trre5g03209 1243 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 678 965 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g03209 1243 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1001 1237 IPR003439 GO:0005524
Trre5g03209 1243 FunFam ABC transporter B family member 4 335 595 - -
Trre5g03209 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 336 586 IPR027417 -
Trre5g03209 1243 Pfam ABC transporter 1019 1168 IPR003439 GO:0005524
Trre5g03209 1243 ProSitePatterns ABC transporters family signature. 484 498 IPR017871 GO:0005524|GO:0016887
Trre5g03209 1243 CDD ABC_MTABC3_MDL1_MDL2 1001 1240 - -
Trre5g03209 1243 Pfam ABC transporter 363 512 IPR003439 GO:0005524
Trre5g03209 1243 CDD ABC_6TM_Pgp_ABCB1_D1_like 19 318 - -
Trre5g03209 1243 SUPERFAMILY ABC transporter transmembrane region 7 326 IPR036640 GO:0005524|GO:0016020
Trre5g03209 1243 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 20 310 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre5g03209 1243 CDD ABC_MTABC3_MDL1_MDL2 345 586 - -
Trre5g03209 1243 PANTHER ABC TRANSPORTER B FAMILY 7 702 IPR039421 -
Trre5g03209 1243 SMART AAA_5 1028 1214 IPR003593 GO:0016887
Trre5g03209 1243 SMART AAA_5 372 558 IPR003593 GO:0016887
Trre5g03209 1243 MobiDBLite consensus disorder prediction 590 612 - -
Trre5g03209 1243 Gene3D - 987 1243 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03209 Trre-Chr5 27774784 27780037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03209 680 1242 Calmodulin-binding Proteins AT2G36910 38.584 1.99e-115 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03209 K05658 - gmx:100804664 1989.54