Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03206 ATGGGAGAAACCGGTATCATTGCAACCTTAAACCCCACGGCTCAAGAGTTTAACCCAACAAACCACATTCCTCTCACCATCGCCGTCGGCGTTCCCTATCCCTACCCACCCTACGCCGTCACACCTCCGCCGCACCTCTCTCCCATACCAACCCGCTCCATCCTCCTCAGTCCAGTCCCTCCTACCCCTGAATCCATCCTCCGAAAAGATCTCGGTGCCTTCGGCGAAGTCAGAGCCGTCAATACCGATTCCTTCCGTCACGGAATCATAACGGCTCACTTCTACGACCTAAGACACGCTGAAACGGCGTTCACCGCTATTCGTACTCATCATGTTCACTGTGTCTCGTACTTTAACCCGCTTTCTCATCATCAATTTTACTCAGCTCCTCCGCCGCCGCCGGGACTCGTCGCCGGTGTTCCTCTCTGGGCTCACTATGTTCACTCTGATGCTGAAAATCAAGGAACCCTAGTCCTATTCAACGTTGACGACAACGTTTCCGCTAATCATCTCCGACGAGTTTTCGAACCTTTTGGAGCCATAAAGGAAGTGAGGGACACTGCAGGGAAGAAAAAGAATCAAAGATTTGTTGAATTTTTTGACATAAGAGATGCAGCTAAAGCTATGAATGAAATGAATGGAAAAGAAATTGATGGAAAAAATGTTGCTATTGAGTTTAGTAGACCAAAATTTTTCCATTCAAATAATCCTAATTTTTATGTTTCCAATAAGCCATTTCATTTAAACTTTAATAATCCACCACCACCACCACCACCTCCTTCACCGCGACGACATTTTGGTCCTTCACCACAGTTATCTCCAAAAAGTTTCACATTAGGTCCTAATAGAATTGGTGGTGAAGAACATTATGGTGCTAAGAGGAACTTTGTTAGGAGTGAAAGTAGAGAGAGCTTTGGAGAAAGAAGCTGGGTTTGGAAGGGGAAGCAAGTAAGGAAGCATGAACCTCGTTTTTTTATCAAAGAAGATGCCATTGTTGAATCTGATTCTAGAACAACTCTCATGATCAAAAACATACCCAACAAGTACAGTCAGAAGTTGCTGTTGAATATGTTGGACAACCACTGCAAACACTGCAATGACCAGATAGGCGACGGCGATGATCAGCCTCTATCCTCCTATGACTTTGTTTACCTTCCTATTGATTTCAAGAACAAGTGCAACGTGGGATATGGGTTTGTGAATATGACATCTCCGGAGGCAACTCTGAGACTCTACAAAGCCTTCCACCACCAAAATTGGGAGGTCTTTAACTCTAGAAAAATTTGTCAACTCACCTATGCCAGAATTCAGGGTTTGGAAGCATTGAAGGAGCATTTTAAGAACTCAAAGTTCCCATGCGAAATGGAGCATTATCTGCCGGTGGTGTTTTCACCACCTCGAGATGGGAAGAAGAATTTAACAGACCCAATTCCAGTAGTTGGGAACATGATAAGAGTTGGTGCTGCTGCTCCTCCTGTAGATGATGGATGTGGCTGTGCCTGTGCCTGTGCCTGTGATGACGCTATCTGCTACAAAAGTGGCGGCATAGGTGATGATAATGATGATAAAACTGATATGAAGTGA 1584 0.4489 MGETGIIATLNPTAQEFNPTNHIPLTIAVGVPYPYPPYAVTPPPHLSPIPTRSILLSPVPPTPESILRKDLGAFGEVRAVNTDSFRHGIITAHFYDLRHAETAFTAIRTHHVHCVSYFNPLSHHQFYSAPPPPPGLVAGVPLWAHYVHSDAENQGTLVLFNVDDNVSANHLRRVFEPFGAIKEVRDTAGKKKNQRFVEFFDIRDAAKAMNEMNGKEIDGKNVAIEFSRPKFFHSNNPNFYVSNKPFHLNFNNPPPPPPPPSPRRHFGPSPQLSPKSFTLGPNRIGGEEHYGAKRNFVRSESRESFGERSWVWKGKQVRKHEPRFFIKEDAIVESDSRTTLMIKNIPNKYSQKLLLNMLDNHCKHCNDQIGDGDDQPLSSYDFVYLPIDFKNKCNVGYGFVNMTSPEATLRLYKAFHHQNWEVFNSRKICQLTYARIQGLEALKEHFKNSKFPCEMEHYLPVVFSPPRDGKKNLTDPIPVVGNMIRVGAAAPPVDDGCGCACACACDDAICYKSGGIGDDNDDKTDMK 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03206 527 MobiDBLite consensus disorder prediction 249 267 - -
Trre5g03206 527 CDD RRM3_EAR1_like 337 438 IPR034458 -
Trre5g03206 527 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 229 IPR000504 GO:0003723
Trre5g03206 527 SMART rrm1_1 156 225 IPR000504 GO:0003723
Trre5g03206 527 FunFam Terminal EAR1-like 1 290 443 - -
Trre5g03206 527 Pfam RNA recognition motif 2 337 447 IPR007201 -
Trre5g03206 527 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 158 222 IPR000504 GO:0003723
Trre5g03206 527 PANTHER RNA RECOGNITION MOTIF-CONTAINING 251 460 - -
Trre5g03206 527 SUPERFAMILY RNA-binding domain, RBD 156 417 IPR035979 GO:0003676
Trre5g03206 527 Gene3D - 148 236 IPR012677 -
Trre5g03206 527 MobiDBLite consensus disorder prediction 247 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03206 Trre-Chr5 27740771 27743631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03206 157 274 Eukaryotic Initiation Factors Gene Family AT2G23350 32.168 1.86e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03206 - - psat:127082995 738.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03206 5 27740771 27743631 Trre5g03206 5 27740771 27743631 ECH