Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03200 ATGGCATTATTTGCTACCACACTAGTGTTCCATTTCTTGCTTCTTGCTCCAATTTTGATTTATTCTTCTCCAGTTGAAGATCCTGAATTAGTGGTCCAAGAAGTGCAAAAGAGCATCATTGAGAATCAGAACAGAAGAAAATTGGGTTATTATTCTTGTGGCACAAACAACCCAATTGATGATTGTTGGAGATGTGACCCCAATTGGGAAAATAACCGCAAACGTCTAGCTAAATGTGCTATTGGATTTGGAAGACATGCAATTGGAGGCAAAGATGGAAAATATTACATAGTAAGTGACTCAAGTGATGACCCTATAAATCCAAAACCAGGTACATTAAGACATGCTGTTATTCAACAAGAGCCATTATGGATCATTTTCAAACATGACATGGTGATTAATCTAAAAATGGATCTTTTAATGAATTCCTACAAAACAATTGATGGTAGAGGAGTAAATGTACACATAGCTGAAGGACCATGTATTAGGATACAACAAAAGAATAACATTATAATTCATGGTATACATATTCATCATTGTGTAAGAGGTGGTAGTGGCTATGTGAGTGACTCACCTAATCATCGTGTGTTGAAGACAAGATCAGATGGTGATGGGATTACAATTTATGGTGGGAAACATATTTGGGTGGATCATTGTTCTTTGTCTAATTGTTTTGATGGTTTGATTGATGTTGTTCATGGATCGACGGCTGTTACTATTTCTAATAATTATATGACACACCATAATAAAGTTATGCTTTTGGGACATAGTGATTCATATGATGAGGATAAAAATATGCAAGCTACTATTGCTTTTAACCATTTTGGAGAAGGGCTTGGGGGAAGAATGCCAAGATGTAGGTTCGGATACTTTCATGTGGTGAACAACGATTACACACATTGGCAACAGTACGCAATAGGTGGAAGTTCATCACCAACTATTTTCAGTCAAGGCAACAGATTTCTAGCTCCAGATGATGATGACCACAAAGAGATCACAAAGCACTTTGACTCATCAAAGGGTGAGTGGCAAAACTGGAATTGGAGGTCAGAAGGAGATCTAATGTTGAATGGTGCATTCTTCACGCGGTCTGGAGCAGGAGCGACTTCATCGACATACGCCAAAGCCTCAAGCATGTCAGCACGACCACCTATGCTTGTGGCTTCGATGACAGCAGGAGCTGGAGTTCTTAGATGCAAAAAGGGTTACCAATGCTACTAG 1221 0.3874 MALFATTLVFHFLLLAPILIYSSPVEDPELVVQEVQKSIIENQNRRKLGYYSCGTNNPIDDCWRCDPNWENNRKRLAKCAIGFGRHAIGGKDGKYYIVSDSSDDPINPKPGTLRHAVIQQEPLWIIFKHDMVINLKMDLLMNSYKTIDGRGVNVHIAEGPCIRIQQKNNIIIHGIHIHHCVRGGSGYVSDSPNHRVLKTRSDGDGITIYGGKHIWVDHCSLSNCFDGLIDVVHGSTAVTISNNYMTHHNKVMLLGHSDSYDEDKNMQATIAFNHFGEGLGGRMPRCRFGYFHVVNNDYTHWQQYAIGGSSSPTIFSQGNRFLAPDDDDHKEITKHFDSSKGEWQNWNWRSEGDLMLNGAFFTRSGAGATSSTYAKASSMSARPPMLVASMTAGAGVLRCKKGYQCY 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03200 406 PRINTS Pollen allergen Amb family signature 304 323 IPR018082 -
Trre5g03200 406 PRINTS Pollen allergen Amb family signature 102 127 IPR018082 -
Trre5g03200 406 PRINTS Pollen allergen Amb family signature 376 399 IPR018082 -
Trre5g03200 406 PRINTS Pollen allergen Amb family signature 138 154 IPR018082 -
Trre5g03200 406 PRINTS Pollen allergen Amb family signature 202 223 IPR018082 -
Trre5g03200 406 PRINTS Pollen allergen Amb family signature 79 96 IPR018082 -
Trre5g03200 406 PRINTS Pollen allergen Amb family signature 282 301 IPR018082 -
Trre5g03200 406 PRINTS Pollen allergen Amb family signature 346 370 IPR018082 -
Trre5g03200 406 Gene3D - 56 398 IPR012334 -
Trre5g03200 406 FunFam Pectate lyase 56 398 - -
Trre5g03200 406 Pfam Pectate lyase 141 321 IPR002022 -
Trre5g03200 406 PANTHER PECTATE LYASE 18-RELATED 29 403 IPR045032 GO:0030570
Trre5g03200 406 SMART amb_all 130 327 IPR002022 -
Trre5g03200 406 SUPERFAMILY Pectin lyase-like 32 399 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03200 Trre-Chr5 27643828 27646090 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03200 2 405 Polysaccharide Lyase AT5G63180 67.241 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03200 K01728 - gmx:100801136 692.189