Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03197 ATGGCACTTCCACTCTCATTCATTCTACTCTTATTACTTCTTGTACCTTCCTTCATTCAATCCTCTCAACTTCAAGATCCTGAATTAATAGTCCAACAAGTACAAAAGAGTATTAATGATTCAAGGAGAAATTTAGCATTTCTTTCTTGTGGAAGTGGCAACCCAATTGATGATTGTTGGAGATGTGATAAAAATTGGGAAAAGAATCGACAACGATTAGCGGATTGTTCGATTGGATTTGGAAAACATGCAATTGGAGGTAGAGATGGTAAAATATATGTAGTAACTGACCCTGGTGATCATCCAGTGACACCAAAGCCAGGAACATTAAGATATGGTGTTATTCAAGAAGAACCATTATGGATAATCTTCAAACGTGATATGGTGATTAAGCTTAAACAAGAATTAATGATGAATTCATTCAAAACTATTGATGGTAGAGGTACAAATGTGCACATTGCTGGTGGACCTTGTATTACTATACAATTTGTTACAAATATTATTATTCATGGTATTAATGTACATGATTGTAAAAGAGGTGGAAATGCTTATGTTAGAGATTCACCTACACATTATGGTTTTAGGACACTTTCTGATGGTGATGGTATTTCAGTTTTTGGTGGAAGTCATGTTTGGATTGATCATGTTTCTCTCTCTAATTGTCGTGATGGATTAATTGATGTTATTCATGGATCTACAGCTATTACTATTTCTAATAATTTTATGACTCATCATAATAAAGTTATGCTTTTGGGTCATAGTGATAGTTTCACTAGAGATAAGAATATGCAAGTTACTATTGCTTTTAACCATTTTGGAGAAGGCCTAGTTCAAAGAATGCCAAGATGTAGGCATGGATATTTTCATGTGGTGAACAATGACTATACACATTGGCAAATGTATGCTATAGGTGGAAGTGCTAATCCAACTATCAATAGCCAAGGCAATAGATTTCTTGCTCCCAATGATAATACCTTCAAAGAGGTGACGAAGCGTGAGAATGCGGGACAGAGTCAATGGAAGAATTGGAATTGGAGATCTAGTGGTGATTTGTTGTTAAATGGTGCCTTTTTTAGGCCATCAGGAGCAGGTTCATCATCAAGCTATGCAAGAGCATCTAGTTTGGCAGCAAAACCATCTTCAGTAGTAGCTTCTATTACTGCATCAGCTGGATCACTAAACTGCAGAAAGGGATCTCGTTGCTGA 1206 0.3607 MALPLSFILLLLLLVPSFIQSSQLQDPELIVQQVQKSINDSRRNLAFLSCGSGNPIDDCWRCDKNWEKNRQRLADCSIGFGKHAIGGRDGKIYVVTDPGDHPVTPKPGTLRYGVIQEEPLWIIFKRDMVIKLKQELMMNSFKTIDGRGTNVHIAGGPCITIQFVTNIIIHGINVHDCKRGGNAYVRDSPTHYGFRTLSDGDGISVFGGSHVWIDHVSLSNCRDGLIDVIHGSTAITISNNFMTHHNKVMLLGHSDSFTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWQMYAIGGSANPTINSQGNRFLAPNDNTFKEVTKRENAGQSQWKNWNWRSSGDLLLNGAFFRPSGAGSSSSYARASSLAAKPSSVVASITASAGSLNCRKGSRC 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03197 401 PANTHER PECTATE LYASE 18-RELATED 21 399 IPR045032 GO:0030570
Trre5g03197 401 SUPERFAMILY Pectin lyase-like 39 396 IPR011050 -
Trre5g03197 401 Gene3D - 53 394 IPR012334 -
Trre5g03197 401 PRINTS Pollen allergen Amb family signature 372 395 IPR018082 -
Trre5g03197 401 PRINTS Pollen allergen Amb family signature 301 320 IPR018082 -
Trre5g03197 401 PRINTS Pollen allergen Amb family signature 343 367 IPR018082 -
Trre5g03197 401 PRINTS Pollen allergen Amb family signature 76 93 IPR018082 -
Trre5g03197 401 PRINTS Pollen allergen Amb family signature 199 220 IPR018082 -
Trre5g03197 401 PRINTS Pollen allergen Amb family signature 99 124 IPR018082 -
Trre5g03197 401 PRINTS Pollen allergen Amb family signature 135 151 IPR018082 -
Trre5g03197 401 PRINTS Pollen allergen Amb family signature 279 298 IPR018082 -
Trre5g03197 401 Pfam Pectate lyase 133 318 IPR002022 -
Trre5g03197 401 FunFam Pectate lyase 53 394 - -
Trre5g03197 401 SMART amb_all 127 324 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03197 Trre-Chr5 27570231 27571875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03197 3 401 Polysaccharide Lyase AT5G63180 74.257 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03197 K01728 - gmx:100816256 739.569