Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03191 ATGGCGGTTCTGTTACCTTCCACAGCAACTATACTCTCTACTCCGTTCGCAAACCGGATTCTTCCACTTCGCCATCACTCCCACGCCTTCTCACCCTCCACCAAACGCTTTCTTCGCGGTTCTCTTTCCGTTGCCCGCTTCGGTTTTCAACCCGGATTTATACCCGAACCGGATGACGCCCATTTCGCTATCAAGGAATTGTTTAACCGAGCGGAGGATACGGTGGTAACCACCGCCATCGCCACCGCCAAGCAGGACAACGATTTGCTTTCATTAATTACCAATTTCGTCGAGACTGTTCTCAAGGTACTTAAGTTTGGGCTTTCTACTTTGCATGTGCCGAATGCTTATGGTTTTGCAATTGTAATGCTTGCAGTTCTTGTAAATGCTGCCATATTTCCGTTGACAAGAAAACAGGTAGAATCTGACATGGCAATGCAATCTTTGAACCCTCAATTAGAGGCCATCGTAAAACAGTATTCCGGGAATTCCAAAAAATCAATTAAACAGAATGTCGAGGATCTGGAGAGACTTAAACTGGAAACTGATCGGTTATATAAATTAGCCAACTTTGATCCTCTATCAGGATTCCTGCCTGTTCTCTTAACAACACCAGTGTGGATCGGGCTATATCAAGCCTTTTCAAAGATGGCAGATGGGGGACCTCTTAGTGAAGGCTTCTTTTGGATACCTTCTCTTTCTGGTCCAACTACAATTGCAGCTCGGCAAAATGGAAATGGTATCTCGTGGCTTTTTCCTTTTGTGGATGGTCACCCTCTCCTTGGATGGCCAGATACATTGGCTTACCTTGTCTTGCCTGTTTTGTTGGTTGTCTCTCGATACATTTCTCTCCAAATAATACCATCATCAGAGGGACAACCAGTGTATACCAAAGATCTAAAGAATTGGCCCCTTGGGAAATCCTTGACCTTTGTGATAAAGGTTGATACTCCCAAAGTGAAGAAGAGTTCTAAAAAAGCCTTCGATGTCAATGTCCTTCTTTCATTAATGGTTGGTTGTTTTGCTCTTTTAGTTCCTTCTGGTCTTAGCCTTTACTGGTTCACAGATAATATATTGAACACTTTACAGCAAATATGGCTTCAAAAGTTAGGAGGTGCAAAAAATCCTCTTGGACAAGTTCTTGATGATGATGTGAAAAATGACCCAATGCAGATTTAG 1179 0.4309 MAVLLPSTATILSTPFANRILPLRHHSHAFSPSTKRFLRGSLSVARFGFQPGFIPEPDDAHFAIKELFNRAEDTVVTTAIATAKQDNDLLSLITNFVETVLKVLKFGLSTLHVPNAYGFAIVMLAVLVNAAIFPLTRKQVESDMAMQSLNPQLEAIVKQYSGNSKKSIKQNVEDLERLKLETDRLYKLANFDPLSGFLPVLLTTPVWIGLYQAFSKMADGGPLSEGFFWIPSLSGPTTIAARQNGNGISWLFPFVDGHPLLGWPDTLAYLVLPVLLVVSRYISLQIIPSSEGQPVYTKDLKNWPLGKSLTFVIKVDTPKVKKSSKKAFDVNVLLSLMVGCFALLVPSGLSLYWFTDNILNTLQQIWLQKLGGAKNPLGQVLDDDVKNDPMQI 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03191 392 Pfam 60Kd inner membrane protein 117 369 IPR028055 -
Trre5g03191 392 NCBIfam membrane protein insertase YidC 117 369 IPR028055 -
Trre5g03191 392 CDD 5TM_YidC_Alb3 118 369 IPR047196 -
Trre5g03191 392 PANTHER OXA1 75 368 IPR001708 GO:0016020|GO:0032977
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03191 Trre-Chr5 27517326 27525076 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03191 59 374 Chloroplast and Mitochondria Gene Families AT2G28800 44.242 2.23e-83 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03191 K03217 - gmx:100802546 425.246