Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03190 ATGGCGGTTCTGTTACCTTCCACACCAACTATACTCTCTACTCCGTTCGGAAACCGGTCCACAACGCATCTTCCACTTCGACCTCACTCCCACCCCTTCTCACCCTCCACCAAACGCTTTCTTCGCGGTTCTCTTTCCATTGCCCGTTACGGATTTCAACCCGAACCGGATGAAGCCGAATTCGTTATCAGGGAATTGTATAACCAAGCGGAGGGTTTTCTTTACACAATTGCCGATGCGGCTGTTTTTTCTTCCGATACGGTGGTAACCACCACCATCGCCACCGCCAAGCAGAACAACGATTTGCTTTCATTAATTACCAGTTACGTTGAGACTGTTCTCAAGGTACTTAAGTTTGGGCTTTATACTTTGCATGTGCCATATGCGTATGGTTTTGCAATCATAATGCTGTCAGTTCTTGTAAACACTGCCTTATTTCCGTTGAGAAGAAAACAGGTAGAATGTGACAAGGCAATGGATTCTTTGAAACCTCAAATAGAAGCTATCGTAAAGCAGTATGATGGGGATAAGGAGAGAATTGCACTTGAAACTGATCGGTTATATGAATTAGCCAACATTGATCCTCTACCAGTATTGCTGCCCAGTCTCTTAACAATACCAGTGTGGATCGGGCTATATCGAGCCTTTTCTAATATGGCAGATGGGGGACCTCTTAGTGAAGGCTTCTTTTGGATACCTTCTCTTTCTGGTCCAACTACAATTGCAGCTTTGCAAAATGGAAGTGGTATCTCCTGGCTTTTTCCTTTTGTGGATGGTCACCCCCCCCTTGGATGGCCAGATACATTGGCTTACCTTGTCTTGCCTGTTTTGCATGTTGTCTCTCAATACATTTCTCGCCAAATATTACAATCATCACAGGAACCATCAGTTTATACCAAAACCCTAGAGAAAGAAGTAGATTGGTCCGTTGGGGTATCCTTGACCTTTGAGAGAAAGGATACTGATCCCAATGTGAAGAGTTCTCAAGAAGTCTTTCATTTTCATGTCAATATTTTGGATACTGATTTCGACTTGGAGAGTTCTCAATTATTAGATGAGGTCATTTCATTAGTGTTTGGTTTTTTTACTCTCTTAGTTCCTTCTGGTCTTGGGCTTTACTGGTTCACAAATAATATATTGAATACTTTACAGCAAATATGGCTTCAAAAGTTAGAAGGTGCAAAAAATCCTTTGAGACATATTCTAGATGATATTACGAAAAATGACCCAATGCAGATTCAGAAGTCAGTATCTAAACTAAATTCTACAAAAGTTGAAGAAACTAAAACAGTTGACAGATTTACCGCAGAGTTGTCACGACCTGGTGGCAGGTTGGTATTAACAATCACAACTACTGGATTAGACCCAGATGCCGTGACAAAGGATTGA 1389 0.4168 MAVLLPSTPTILSTPFGNRSTTHLPLRPHSHPFSPSTKRFLRGSLSIARYGFQPEPDEAEFVIRELYNQAEGFLYTIADAAVFSSDTVVTTTIATAKQNNDLLSLITSYVETVLKVLKFGLYTLHVPYAYGFAIIMLSVLVNTALFPLRRKQVECDKAMDSLKPQIEAIVKQYDGDKERIALETDRLYELANIDPLPVLLPSLLTIPVWIGLYRAFSNMADGGPLSEGFFWIPSLSGPTTIAALQNGSGISWLFPFVDGHPPLGWPDTLAYLVLPVLHVVSQYISRQILQSSQEPSVYTKTLEKEVDWSVGVSLTFERKDTDPNVKSSQEVFHFHVNILDTDFDLESSQLLDEVISLVFGFFTLLVPSGLGLYWFTNNILNTLQQIWLQKLEGAKNPLRHILDDITKNDPMQIQKSVSKLNSTKVEETKTVDRFTAELSRPGGRLVLTITTTGLDPDAVTKD 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03190 462 NCBIfam membrane protein insertase YidC 130 390 IPR028055 -
Trre5g03190 462 Pfam 60Kd inner membrane protein 130 390 IPR028055 -
Trre5g03190 462 PANTHER OXA1 81 412 IPR001708 GO:0016020|GO:0032977
Trre5g03190 462 CDD 5TM_YidC_Alb3 131 390 IPR047196 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03190 Trre-Chr5 27500186 27514460 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03190 63 395 Chloroplast and Mitochondria Gene Families AT2G28800 43.844 3.09e-87 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03190 K03217 - gmx:100802546 509.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03190 5 27500186 27514460 Trre5g03190 5 27500186 27514460 ECH