Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03182 ATGGATCTGCAAGACTTGTTCCTAGCAGTAACTATAACCTTAGGCTTCATCAAAATATGCAAATATCTATTCCATTTTCTAAACTGGATATGGATCATGTTCTTGAGACCAACAAAAAATCTCAAACAATATGGTTCATGGGCTATAATCACAGGCTCTACTGATGGAATAGGAAAAGCTATGGCTTTTGAGTTTGCATCTAAGGGACTCAACATTCTCTTAGTTGGTAGAAACCCTCTTAAACTTGAAACAACATCAAAAGAGATAATAGATAAACATAGTGGAAATGTTGAAGTAAAGTGTGTTATTATAGACATGCAAAATATAAGTGGAGTGGAAATAATGAAAAGGGTAGAAGAAGCAATAAGTGGTTTAGATGTTGGAATTTTAGTTAATGGTGCTGGTGTTGCTTATCCTTATGCTAGATATTTTCATGAGGTTGATTTAGATTTGATGGATTCTATTATTAAAGTGAATGTTGAAGGAACAACTTGGGTTTCAAAAGCTGTTATTCCTAGTATGATTAAGAAGAAAAAAGGAGCTATTATTAATATTGGTTCTGGTTCTACTGTTGTTCTTCCTTCTTATCCTCTTGTCACACTTTATGCAGCTTCAAAAGCGTATCTTGCAATGTTCTCTTCATGTATCAATTTGGAATACAAGCATCAAGGAATTGACATCCAGTGTCAGGTTCCATTATTTGTGTCAACAAAAATGACAAGAATGAGAGCATCAATTTTTGTTCCAACACCAGAAATATATAGCAAAGCATGCACAAAATGGATTGGCTATGAAAAACTGGTTGTACCTTACTTCTTTCATGATCTACAATCCTTTCTCATAAGGGCTATTCCTGATGTGTTCTTGGATTCATACATGCTGCATTATTTTCTAAAAATGCGCAAAAGAGGACTCATTAAGGACTCAAAGAAAGGCATCTAG 942 0.3429 MDLQDLFLAVTITLGFIKICKYLFHFLNWIWIMFLRPTKNLKQYGSWAIITGSTDGIGKAMAFEFASKGLNILLVGRNPLKLETTSKEIIDKHSGNVEVKCVIIDMQNISGVEIMKRVEEAISGLDVGILVNGAGVAYPYARYFHEVDLDLMDSIIKVNVEGTTWVSKAVIPSMIKKKKGAIINIGSGSTVVLPSYPLVTLYAASKAYLAMFSSCINLEYKHQGIDIQCQVPLFVSTKMTRMRASIFVPTPEIYSKACTKWIGYEKLVVPYFFHDLQSFLIRAIPDVFLDSYMLHYFLKMRKRGLIKDSKKGI 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03182 313 PIRSF 11-beta-HSD1 1 307 - -
Trre5g03182 313 Gene3D - 40 270 - -
Trre5g03182 313 CDD 17beta-HSD1_like_SDR_c 45 285 - -
Trre5g03182 313 PANTHER RH59310P 5 311 - -
Trre5g03182 313 Pfam short chain dehydrogenase 47 241 IPR002347 -
Trre5g03182 313 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 44 306 IPR036291 -
Trre5g03182 313 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 136 IPR002347 -
Trre5g03182 313 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 202 221 IPR002347 -
Trre5g03182 313 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 180 188 IPR002347 -
Trre5g03182 313 PRINTS Glucose/ribitol dehydrogenase family signature 202 221 IPR002347 -
Trre5g03182 313 PRINTS Glucose/ribitol dehydrogenase family signature 125 136 IPR002347 -
Trre5g03182 313 PRINTS Glucose/ribitol dehydrogenase family signature 174 190 IPR002347 -
Trre5g03182 313 PRINTS Glucose/ribitol dehydrogenase family signature 223 240 IPR002347 -
Trre5g03182 313 PRINTS Glucose/ribitol dehydrogenase family signature 47 64 IPR002347 -
Trre5g03182 313 FunFam Hydroxysteroid (17-beta) dehydrogenase 3 41 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03182 Trre-Chr5 27415583 27417313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03182 4 311 Lipid Metabolism Gene Families AT1G67730 51.133 4.13e-114 331
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03182 5 27415583 27417313 Trre5g03182 5 27415583 27417313 ECH
Trre7g04829 7 55692369 55695063 Trre5g03182 5 27415583 27417313 PCT