Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03160 ATGTATCTATCATCAGAAAAGCCTCGTCCAATCGATTTCTACAAAGAAGAAGCAAGAGACATGATGATGGAAGTTGTTACCACCGCCGATCTTCCACCACAACCGCCTCAAATGATTCTCACTGCAGAAAGCAGCGGCGAAGACCCTGAGATGGAGATCAAAGCTCCTAAAAAACGAGCTGAAACTTGGGTACAAGACGAGACACGAAGTCTCATTGGTTTTCGAAGAGAGATGGATTCACTTTTCAACACTTCTAAGTCGAATAAACATCTTTGGGAACAAATTTCTGCTAAGATGAGAGAAAAGGGTTTCGATCGTTCACCGACTATGTGTACTGATAAATGGAGGAATCTTTTGAAAGAATTTAAGAAAGCTAAACATCATCAAGATAGAGGTGGTAGTGGTTCTGGTAAAATGACTTGTTACAAAGAGATTGATGAAATCTTAAGAGAGAGGAGTAAGTGTGCTCAGTATAAGACTCTTACTCCTTCTCCTAAAGTTGAATCTTCTTACATGCACTTTGCTGATAAAGGTATTGATGATGCCAACATTTCTTTTGGGCCTGTTGAAGCTTCTGGAAGACCAACACTCAATCTTGAAAGAAGTTTGGATCATGATGGACATCCTCTTGCCATTGCCGCAGCTGAAGTTGCAGCAAGTGGAGTCCCTCCTTGGAATTGGAGAGAAACACCCGGAAATGGTGGGGAAACTCAGTCTTGTTGTGGAAGGGTTATATCAGTCAAATGGGGCGATTATACAAGACGAATAGGTATTGATGGCACTCCGGAAGCCATCAAGGAGGCCATTAGGGCTGCTTTTAGGTTGAGAACTAAACGTGCATTTTGGTTGGAGGATGAGGAACAAATTATCAGAAGCATTGACCGTGACATGCCTATAGGAAACTACACTCTTCACCTTGATGAAGGAATGGCCATTAAAGTATGCCTATATGATGAGTCTGACCGTATCCCTGTGCATACTGAAGAGAAGATATTTTACACCGAGGATGATTACCGTGAATTTCTGGCACGCCGGGCTTGGACATGTCTAAGAGATCTTGACGGTTATAGAAATATTGACAATATGGATGATCTTCGACCTGGTGCCATATACCGAGGTGTAACTTGA 1128 0.4229 MYLSSEKPRPIDFYKEEARDMMMEVVTTADLPPQPPQMILTAESSGEDPEMEIKAPKKRAETWVQDETRSLIGFRREMDSLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHHQDRGGSGSGKMTCYKEIDEILRERSKCAQYKTLTPSPKVESSYMHFADKGIDDANISFGPVEASGRPTLNLERSLDHDGHPLAIAAAEVAASGVPPWNWRETPGNGGETQSCCGRVISVKWGDYTRRIGIDGTPEAIKEAIRAAFRLRTKRAFWLEDEEQIIRSIDRDMPIGNYTLHLDEGMAIKVCLYDESDRIPVHTEEKIFYTEDDYREFLARRAWTCLRDLDGYRNIDNMDDLRPGAIYRGVT 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03160 375 Pfam Myb/SANT-like DNA-binding domain 62 148 IPR044822 -
Trre5g03160 375 SMART sant 59 121 IPR001005 -
Trre5g03160 375 Gene3D - 63 125 - -
Trre5g03160 375 FunFam trihelix transcription factor GT-1 63 125 - -
Trre5g03160 375 CDD GT1 61 126 - -
Trre5g03160 375 ProSiteProfiles Myb-like domain profile. 55 119 IPR001005 -
Trre5g03160 375 PANTHER FI21293P1 42 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03160 Trre-Chr5 27088730 27094109 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03160 21 374 Trihelix Transcription Factor Family AT3G25990 68.802 0.0 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre5g03160 Myb_DNA-bind_4 1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03160 - - tpra:123907830 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g03160 5 27088730 27094109 Trre5g03160 5 27088730 27094109 ECH