Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03141 ATGAAAGAGGAAATCAAATCAGAATTCAAAAAAGCAGGGTTCGATCTCGACGAAGAAGAAGAGATTCTAAGCAAATGTCTCACTTTCTGCATCAACTACAGTCTCACCCCTTCCGATCTCGTCTCAAGCTGGGAAGTTTATTACCTTAACAGACAGCTGGATGAACCAATTGTACAAAATGCTGAAATGGAAGGATTTTTGTTGCATCTACAGAATAATGTGAAAGAAGATATTATAAAGGAGGAAACTGGTTTGCATCTTTATTCTATCGGAGATGTAGAAATGATCTTAAATAATGACGATGATACAAAGGACGATACTCCCAGCACACCGACGCAGAATCGTCAAGATGCTTATTCGCCTATACATGATACACCATCTTTGTATGGGAATGTTTTAGCATCTGGAAAGCCAGCCAATCTGGTTACACCATTTTCAAAGCGGACAAATAGGTTTGCGGTGAAATTCAGCATCAACACTATTCCTGATGTAGAAAATGAAAAACAAGAACTTAATCACGAGAATGAAGAGGATGACGACTACAGTATTGTTTCAAAAGTCGTAAACCGAAAAAGGTGTTCATTGGTGATTCATGGATCAGGGCCGAAACCAGGTTGCAGATTTATGTATGATAGGACTGAGGATAGGATTAATGCAATAGAAAGCCGGATTAAAAAACATGCAAGAGCACTTGTAGCTTCTGGGCTCTATGAAGAACCAACAGACCCTACAATTGCGTCACCAAGAAGCTTTTTTTCCGTCGGCATGATTTGTTGTGATGGAGAAGGCCGTCTTAACGAGAAATCTGTCATGTTGCAGAGCAGTATTGAGCATTCTGGAGGGGAATGTGTCCGCCTAGACTTACAACGTTTAAGCCATTATTCGGTTTTCCCTGGCCAGGTAGTTGGAATCGGAGGGCATAATCCTAGTGGGCATTGCCTAGTTGCGTCTAAATTGGTTGATTATATACCTACCGCTGTTGCTAGCAAGGATTTGAATCCTTCAAAGAAGCAAGCTATTGATAAGGAGAATCAGCCAACTGATCTGCTTTGTAATCAGAGAGAGCTGTCAATGATTATTGCGGCGGGCCCTTTTACTACAACCGACAATTTGTTGTTTGAGCCTCTTGTAGAGCTGCTGGCATATGCAAAGCGAAGACCACCACAGCTTCTTGTATTGCTGGGACCATTTATTGACTCTGAACACCCAGACATCAAGAAAGGAACTGTGGACAGGGATTTTGATGAAATATTTCATTTTGAAGTCTTGAAGAAGTTGGAAGATTATGTAGAATCTATGGGTTCTACAGTACGTGTTCTCCTTGTACCATCTATACGGGATGCTAACCATGATTTTGTTTTTCCTCAGCCTGCATTTGATATCAGTCAACTTCAGATAGCCAGTCTCACTAATCCTGGAATCTTTGAGGCAAACGAGCTCAAAGTTGGTTGCTGCACTTTGGATGTTCTCAAGCAGATCAGTGGGGAGGAGATATCACGAATTGCAGCAGATGGAAAACCTATTGATCGTTTGAGTAGACTTGCAAACCATATTCTTAACCAACAGAGTTTCTATCCACTTTACCCGCCAGCAGAAAGTGTTCCCTTGGACTTTTCTCTGGCACCAGAAGCCCTTCAACTCTCATTGGTTCCAGATGTTCTTATCTTACCTTCAGACATCAAGTACTTTGTCAAGGTTCTTAATAACGAAAGCGAAGAGACTAACTGCAAGAAATGCATTGCCGTCAATCCGGGAAGATTAGCCAAAGGAGAGGGAGGAGGTACTTTTGTAGAGCTTGATTATAGTGGAGGTCCCGATAAAATTAACGCTTCAATTTTGGCCATATGA 1848 0.415 MKEEIKSEFKKAGFDLDEEEEILSKCLTFCINYSLTPSDLVSSWEVYYLNRQLDEPIVQNAEMEGFLLHLQNNVKEDIIKEETGLHLYSIGDVEMILNNDDDTKDDTPSTPTQNRQDAYSPIHDTPSLYGNVLASGKPANLVTPFSKRTNRFAVKFSINTIPDVENEKQELNHENEEDDDYSIVSKVVNRKRCSLVIHGSGPKPGCRFMYDRTEDRINAIESRIKKHARALVASGLYEEPTDPTIASPRSFFSVGMICCDGEGRLNEKSVMLQSSIEHSGGECVRLDLQRLSHYSVFPGQVVGIGGHNPSGHCLVASKLVDYIPTAVASKDLNPSKKQAIDKENQPTDLLCNQRELSMIIAAGPFTTTDNLLFEPLVELLAYAKRRPPQLLVLLGPFIDSEHPDIKKGTVDRDFDEIFHFEVLKKLEDYVESMGSTVRVLLVPSIRDANHDFVFPQPAFDISQLQIASLTNPGIFEANELKVGCCTLDVLKQISGEEISRIAADGKPIDRLSRLANHILNQQSFYPLYPPAESVPLDFSLAPEALQLSLVPDVLILPSDIKYFVKVLNNESEETNCKKCIAVNPGRLAKGEGGGTFVELDYSGGPDKINASILAI 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03141 615 FunFam DNA polymerase alpha subunit B 1 76 - -
Trre5g03141 615 PIRSF DNA_pol_alpha_2 1 608 IPR016722 -
Trre5g03141 615 Gene3D - 1 65 IPR043034 -
Trre5g03141 615 Coils Coil 210 230 - -
Trre5g03141 615 PANTHER DNA POLYMERASE 2 ALPHA 70 KDA SUBUNIT 1 602 IPR016722 -
Trre5g03141 615 Pfam DNA polymerase alpha/epsilon subunit B 359 565 IPR007185 GO:0003677|GO:0006260
Trre5g03141 615 MobiDBLite consensus disorder prediction 99 121 - -
Trre5g03141 615 FunFam DNA polymerase alpha subunit B 339 500 - -
Trre5g03141 615 Gene3D - 506 611 - -
Trre5g03141 615 Gene3D - 337 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03141 Trre-Chr5 26824145 26828942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03141 3 615 Core DNA Replication Machinery Family AT1G67630 59.390 0.0 739
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03141 K02321 - gmx:100795306 961.059