Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g03122 ATGACGACAGGTAGAAATGGGGATTATCGCCATGAGGAGTTCAGGGATCGTGACTCTGATTTTGGTATTTCAAGGCGTGGATTTAGTAGTAGTTTTAAGGAAGAGTATGATGGGATTAGAAATGGTAAGGTTCGGAGTAGGGATGCTAGAGAGGGGATTATTCAGAGACAGAGAGATATTAGGGAGAGACAAGTTTTGAATGGCAGTTACCGGTCATCGTCGAGTAGGAGTGACTCCGGAAGCAGTGGTGGCCGTGGTGATAGGCTTGGTTCTAGAAGATCTGAGTTTTCTGTCAAGACTATGGATAGGGAGCCAGGTGAGCTTTCTAGTGAGAGTGAGTCTGATGATTGTGTTGAATCAGTGTCACTGGTAAAATGCCATAAGGAGGTTGTGATGGGAAAAGAGTTTCATTATGGTGTTGAATCAGAATCAGTGTTAAAACGCCATGAGGTTGTAACTGGCAAAGAAAATGGGACCCCTCAGTCTCCATTTGAGAGGAAAAGAAAATTTTCCCCGATAGTATGGGATCAAGATGACAACAAAGTGAATAATTTATCCAAACATAAGGTTGTCACAACATCGCCTACTCTTTCTCCACCACCCCTACTTCCAAGAGCATTTCGTAAGTCGCCTAATGTTCCCTACAATGGAGTTGAAGTTCATCTTCCTGAGAATCCTGAGTTGCCGACTGCCATGGATCCTTTTATGGTGTCTGAGTCAGTTCAAGATGCTGAATCTGAGTCTCCTATAGGTTTGGATTCAATGCTGTCAGAGCAGAGGTTGGTTAATGGGCGGGTAGCTGAGCAACAAGAAGTTGAAGATTATGTTCCAACTCGTAATATATCGTCTTCAAGATGGGCATCTGGAGACAAATCTTCGGACGATGAAGGTAAAATCATTGATGAGAACGAATTCCTTAAAAGGAGGAGGCTATCTCCTATGTCGGGTACGAGGGTAAGAAACAAGACTTTGAAACCAAAGGAATCTAAAATTGAAGGTTTTGATAGGGCTAGAACTAGAACCAAGTCATCTGAATCGGAAGAAAGAGGTAGCACTGGGAGATACTCCGGTGAAGATGATCATCCTGGTATTGAGGCAGAGAAGGATAGCTACATGGAGATTGATGGCGGAGTTTGCAAAAGTGACACAAGTGGCAGTCACACAAATACTGATTCTGAACGTGAAGATGATGGCAGAGAAAGTATGGAACCTCCGGCTCCACCACACAGAGTTGTCAACATGCTTCAGGGCTGTAGAAGTGTTGATGAGTTTGAGAGATTGAACAAGATTAATGAAGGAACATATGGTGTTGTATTTAGGGCCAAAGACAAGAAGACTGGTGAAATAGTGGCATTGAAAAAGGTAAAGATGGAGAAAGAAAAAGAAGGCTTTCCACTGACTTCTCTGAGGGAAATAAACATACTTCTTTCCTTTCATCATCCATTCATAGTTGACGTTAAGGAAGTAGTGGTAGGTAGTAGCCTTGATAGTATTTTTATGGTTATGGAATACATGGAACATGATCTTAAAGAACTAATGGAGGCAATGAAACAACCATTTAGCCAAAGTGAAGTAAAATGCTTAATGCTCCAGCTGTTAGAAGGTGTGAAGTATCTTCACGACAACTGGGTGCTTCACAGGGATTTGAAGACTTCAAACCTGCTTCTGAATAATAAGGGTGAGTTAAAAATTTGCGATTTCGGATTAGCTCGTCAATATGGGAGTCCATTGAAACCATATACATCATTGGTGGTTACTCTTTGGTACAGGGCTCCTGAACTTCTTTTGGGGACAAAGCAGTATTCAACAGCCATTGACATGTGGTCCCTGGGTTGTATAATGGCTGAGCTACTGGCCAAGGAACCGTTATTTAATGGGAGGAATGAATTTGATCAACTTAACAAGATCTTCAGAATTCTCGGCACCCCAAATGAAACAATTTGGCCTGGGTTCTCAAAATTACCTCAAGTCAAGGCTAATTATGTTAAGCATCAGTATAATCTACTGCGCAAAAAATTTCCTGCAACATCATTCACTGGATCCCCAGTTCTTTCTGATTCGGGATTGGATCTGTTGAACAAGCTTCTCACTTATGACCCTGAAAAGAGGATCAGTGCTGAAGATGCTCTCAACCATGAGTGGTTTCGTGAAGTTCCCCTTCCCAAATCTAAAGAATTCATGCCTACATTTCCTGCTCAACATGATAAAGACAGGAGAATGCGAAAAATAATGAAGAGTCTACATCTTATTTTTGGTTAA 2259 0.4174 MTTGRNGDYRHEEFRDRDSDFGISRRGFSSSFKEEYDGIRNGKVRSRDAREGIIQRQRDIRERQVLNGSYRSSSSRSDSGSSGGRGDRLGSRRSEFSVKTMDREPGELSSESESDDCVESVSLVKCHKEVVMGKEFHYGVESESVLKRHEVVTGKENGTPQSPFERKRKFSPIVWDQDDNKVNNLSKHKVVTTSPTLSPPPLLPRAFRKSPNVPYNGVEVHLPENPELPTAMDPFMVSESVQDAESESPIGLDSMLSEQRLVNGRVAEQQEVEDYVPTRNISSSRWASGDKSSDDEGKIIDENEFLKRRRLSPMSGTRVRNKTLKPKESKIEGFDRARTRTKSSESEERGSTGRYSGEDDHPGIEAEKDSYMEIDGGVCKSDTSGSHTNTDSEREDDGRESMEPPAPPHRVVNMLQGCRSVDEFERLNKINEGTYGVVFRAKDKKTGEIVALKKVKMEKEKEGFPLTSLREINILLSFHHPFIVDVKEVVVGSSLDSIFMVMEYMEHDLKELMEAMKQPFSQSEVKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLLNNKGELKICDFGLARQYGSPLKPYTSLVVTLWYRAPELLLGTKQYSTAIDMWSLGCIMAELLAKEPLFNGRNEFDQLNKIFRILGTPNETIWPGFSKLPQVKANYVKHQYNLLRKKFPATSFTGSPVLSDSGLDLLNKLLTYDPEKRISAEDALNHEWFREVPLPKSKEFMPTFPAQHDKDRRMRKIMKSLHLIFG 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g03122 752 MobiDBLite consensus disorder prediction 311 411 - -
Trre5g03122 752 ProSiteProfiles Protein kinase domain profile. 424 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g03122 752 Gene3D Phosphorylase Kinase; domain 1 409 506 - -
Trre5g03122 752 Pfam Protein kinase domain 424 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g03122 752 FunFam Cyclin-dependent kinase G-2 507 746 - -
Trre5g03122 752 ProSitePatterns Serine/Threonine protein kinases active-site signature. 544 556 IPR008271 GO:0004672|GO:0006468
Trre5g03122 752 MobiDBLite consensus disorder prediction 1 23 - -
Trre5g03122 752 MobiDBLite consensus disorder prediction 88 110 - -
Trre5g03122 752 MobiDBLite consensus disorder prediction 30 65 - -
Trre5g03122 752 SMART serkin_6 424 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g03122 752 MobiDBLite consensus disorder prediction 185 204 - -
Trre5g03122 752 SUPERFAMILY Protein kinase-like (PK-like) 416 721 IPR011009 -
Trre5g03122 752 MobiDBLite consensus disorder prediction 1 117 - -
Trre5g03122 752 Gene3D Transferase(Phosphotransferase) domain 1 507 747 - -
Trre5g03122 752 MobiDBLite consensus disorder prediction 151 172 - -
Trre5g03122 752 PANTHER CELL DIVISION PROTEIN KINASE 422 721 - -
Trre5g03122 752 MobiDBLite consensus disorder prediction 321 375 - -
Trre5g03122 752 MobiDBLite consensus disorder prediction 66 84 - -
Trre5g03122 752 FunFam cyclin-dependent kinase G-2 isoform X1 409 506 - -
Trre5g03122 752 MobiDBLite consensus disorder prediction 387 404 - -
Trre5g03122 752 CDD STKc_CDC2L1 418 715 IPR045267 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g03122 Trre-Chr5 26541871 26545360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g03122 398 735 Core Cell Cycle Gene Families AT5G10270 46.459 1.09e-95 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Trre5g03122 Pkinase 6.9e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g03122 K08818 - gmx:100793729 959.518